Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HVN entry

There is 1 chain in PDB entry 5HVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ARG 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5HVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 32Right-handed 310
Helix 2
AA2
A
43 58Right-handed alpha
Helix 3
AA3
A
71 75Right-handed 310
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
104 118Right-handed alpha
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
130 137Right-handed alpha
Helix 8
AA8
A
168 172Right-handed 310
Helix 9
AA9
A
174 192Right-handed alpha
Helix 10
AB1
A
192 208Right-handed alpha
Helix 11
AB2
A
210 230Right-handed alpha
Helix 12
AB3
A
238 245Right-handed 310
Helix 13
AB4
A
246 258Right-handed alpha
Helix 14
AB5
A
263 282Right-handed alpha
Helix 15
AB6
A
286 300Right-handed alpha
Helix 16
AB7
A
311 321Right-handed alpha
Helix 17
AB8
A
347 359Right-handed alpha
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There are 3 sheets in PDB entry 5HVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
162 166parallel
Strand 4
A
123 128parallel
Strand 5
A
97 103parallel
Strand 6
A
36 42parallel
Strand 7
A
63 68parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
150 157anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 337first strand
Strand 2
A
340 345anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il