Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HVO entry

There are 4 chains in PDB entry 5HVO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 12	SER 478
B	ARG 12	CYS 477
C	HIS 11	SER 478
D	HIS 11	SER 478

There are 88 helices in PDB entry 5HVO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	67	Right-handed 310
Helix 2	AA2	A	68	81	Right-handed alpha
Helix 3	AA3	A	88	97	Right-handed alpha
Helix 4	AA4	A	103	109	Right-handed alpha
Helix 5	AA5	A	118	140	Right-handed alpha
Helix 6	AA6	A	151	154	Right-handed 310
Helix 7	AA7	A	155	165	Right-handed alpha
Helix 8	AA8	A	184	189	Right-handed alpha
Helix 9	AA9	A	193	202	Right-handed alpha
Helix 10	AB1	A	211	226	Right-handed alpha
Helix 11	AB2	A	252	261	Right-handed alpha
Helix 12	AB3	A	262	276	Right-handed alpha
Helix 13	AB4	A	289	292	Right-handed 310
Helix 14	AB5	A	293	308	Right-handed alpha
Helix 15	AB6	A	309	312	Right-handed 310
Helix 16	AB7	A	328	350	Right-handed alpha
Helix 17	AB8	A	365	376	Right-handed alpha
Helix 18	AB9	A	390	398	Right-handed alpha
Helix 19	AC1	A	413	418	Right-handed alpha
Helix 20	AC2	A	428	441	Right-handed alpha
Helix 21	AC3	A	443	461	Right-handed alpha
Helix 22	AC4	A	462	476	Right-handed alpha
Helix 23	AC5	B	65	67	Right-handed 310
Helix 24	AC6	B	68	81	Right-handed alpha
Helix 25	AC7	B	88	97	Right-handed alpha
Helix 26	AC8	B	103	109	Right-handed alpha
Helix 27	AC9	B	118	140	Right-handed alpha
Helix 28	AD1	B	151	154	Right-handed 310
Helix 29	AD2	B	155	165	Right-handed alpha
Helix 30	AD3	B	184	189	Right-handed alpha
Helix 31	AD4	B	193	202	Right-handed alpha
Helix 32	AD5	B	211	226	Right-handed alpha
Helix 33	AD6	B	252	260	Right-handed alpha
Helix 34	AD7	B	262	276	Right-handed alpha
Helix 35	AD8	B	289	292	Right-handed 310
Helix 36	AD9	B	293	308	Right-handed alpha
Helix 37	AE1	B	309	312	Right-handed 310
Helix 38	AE2	B	328	350	Right-handed alpha
Helix 39	AE3	B	365	376	Right-handed alpha
Helix 40	AE4	B	390	398	Right-handed alpha
Helix 41	AE5	B	413	418	Right-handed alpha
Helix 42	AE6	B	428	441	Right-handed alpha
Helix 43	AE7	B	443	461	Right-handed alpha
Helix 44	AE8	B	462	476	Right-handed alpha
Helix 45	AE9	C	65	67	Right-handed 310
Helix 46	AF1	C	68	80	Right-handed alpha
Helix 47	AF2	C	88	97	Right-handed alpha
Helix 48	AF3	C	103	109	Right-handed alpha
Helix 49	AF4	C	118	140	Right-handed alpha
Helix 50	AF5	C	151	154	Right-handed 310
Helix 51	AF6	C	155	165	Right-handed alpha
Helix 52	AF7	C	184	189	Right-handed alpha
Helix 53	AF8	C	193	203	Right-handed alpha
Helix 54	AF9	C	211	226	Right-handed alpha
Helix 55	AG1	C	252	260	Right-handed alpha
Helix 56	AG2	C	262	276	Right-handed alpha
Helix 57	AG3	C	289	292	Right-handed 310
Helix 58	AG4	C	293	308	Right-handed alpha
Helix 59	AG5	C	309	312	Right-handed 310
Helix 60	AG6	C	328	350	Right-handed alpha
Helix 61	AG7	C	365	376	Right-handed alpha
Helix 62	AG8	C	390	398	Right-handed alpha
Helix 63	AG9	C	412	417	Right-handed 310
Helix 64	AH1	C	428	441	Right-handed alpha
Helix 65	AH2	C	443	461	Right-handed alpha
Helix 66	AH3	C	462	476	Right-handed alpha
Helix 67	AH4	D	65	67	Right-handed 310
Helix 68	AH5	D	68	80	Right-handed alpha
Helix 69	AH6	D	88	97	Right-handed alpha
Helix 70	AH7	D	103	109	Right-handed alpha
Helix 71	AH8	D	118	140	Right-handed alpha
Helix 72	AH9	D	151	154	Right-handed 310
Helix 73	AI1	D	155	165	Right-handed alpha
Helix 74	AI2	D	184	189	Right-handed alpha
Helix 75	AI3	D	193	202	Right-handed alpha
Helix 76	AI4	D	211	226	Right-handed alpha
Helix 77	AI5	D	252	262	Right-handed alpha
Helix 78	AI6	D	262	276	Right-handed alpha
Helix 79	AI7	D	289	292	Right-handed 310
Helix 80	AI8	D	293	308	Right-handed alpha
Helix 81	AI9	D	309	312	Right-handed 310
Helix 82	AJ1	D	328	350	Right-handed alpha
Helix 83	AJ2	D	365	375	Right-handed alpha
Helix 84	AJ3	D	390	398	Right-handed alpha
Helix 85	AJ4	D	412	417	Right-handed 310
Helix 86	AJ5	D	428	441	Right-handed alpha
Helix 87	AJ6	D	443	461	Right-handed alpha
Helix 88	AJ7	D	462	476	Right-handed alpha

There are 11 sheets in PDB entry 5HVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	54	59	parallel
Strand 3	A	13	19	parallel
Strand 4	A	145	149	parallel
Strand 5	A	173	177	parallel
Strand 6	A	206	209	parallel
Strand 7	A	240	246	parallel
Strand 8	A	234	237	anti-parallel
Strand 9	A	230	231	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	33	36	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	360	first strand
Strand 2	A	315	322	parallel
Strand 3	A	280	287	parallel
Strand 4	A	378	381	parallel
Strand 5	A	405	409	parallel
Strand 6	A	422	424	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	54	59	parallel
Strand 3	B	13	19	parallel
Strand 4	B	145	149	parallel
Strand 5	B	173	178	parallel
Strand 6	B	206	209	parallel
Strand 7	B	240	246	parallel
Strand 8	B	234	237	anti-parallel
Strand 9	B	230	231	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	34	36	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	360	first strand
Strand 2	B	315	322	parallel
Strand 3	B	280	287	parallel
Strand 4	B	378	381	parallel
Strand 5	B	405	409	parallel
Strand 6	B	422	424	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	53	59	parallel
Strand 3	C	12	19	parallel
Strand 4	C	145	149	parallel
Strand 5	C	173	177	parallel
Strand 6	C	206	209	parallel
Strand 7	C	240	246	parallel
Strand 8	C	234	237	anti-parallel
Strand 9	C	230	231	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	361	first strand
Strand 2	C	315	322	parallel
Strand 3	C	280	287	parallel
Strand 4	C	378	381	parallel
Strand 5	C	405	409	parallel
Strand 6	C	422	424	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	53	59	parallel
Strand 3	D	12	19	parallel
Strand 4	D	145	149	parallel
Strand 5	D	173	177	parallel
Strand 6	D	206	209	parallel
Strand 7	D	240	246	parallel
Strand 8	D	234	237	anti-parallel
Strand 9	D	230	231	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	34	36	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	361	first strand
Strand 2	D	315	322	parallel
Strand 3	D	280	287	parallel
Strand 4	D	378	381	parallel
Strand 5	D	405	409	parallel
Strand 6	D	422	424	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HVO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVO