Analysis of interatomic Contacts of Structural Units in PDB entry:
5HW4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HW4 entry

There are 3 chains in PDB entry 5HW4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 11ASP 241
B
 MET 11ALA 237
C
 MET 11LYS 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5HW4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
28 38Right-handed alpha
Helix 3
AA3
A
45 56Right-handed alpha
Helix 4
AA4
A
71 83Right-handed alpha
Helix 5
AA5
A
102 111Right-handed alpha
Helix 6
AA6
A
123 132Right-handed alpha
Helix 7
AA7
A
148 159Right-handed alpha
Helix 8
AA8
A
174 187Right-handed alpha
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
221 225Right-handed 310
Helix 11
AB2
B
28 38Right-handed alpha
Helix 12
AB3
B
45 56Right-handed alpha
Helix 13
AB4
B
73 84Right-handed alpha
Helix 14
AB5
B
102 112Right-handed alpha
Helix 15
AB6
B
123 132Right-handed alpha
Helix 16
AB7
B
148 160Right-handed alpha
Helix 17
AB8
B
174 187Right-handed alpha
Helix 18
AB9
B
210 220Right-handed alpha
Helix 19
AC1
B
221 225Right-handed 310
Helix 20
AC2
C
23 27Right-handed 310
Helix 21
AC3
C
28 38Right-handed alpha
Helix 22
AC4
C
45 56Right-handed alpha
Helix 23
AC5
C
72 83Right-handed alpha
Helix 24
AC6
C
102 112Right-handed alpha
Helix 25
AC7
C
123 133Right-handed alpha
Helix 26
AC8
C
148 160Right-handed alpha
Helix 27
AC9
C
174 187Right-handed alpha
Helix 28
AD1
C
210 219Right-handed alpha
Helix 29
AD2
C
220 225Right-handed 310
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There are 5 sheets in PDB entry 5HW4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
40 43parallel
Strand 3
A
87 90parallel
Strand 4
A
14 16parallel
Strand 5
A
116 118parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
165 170anti-parallel
Strand 5
A
139 144parallel
Strand 6
B
139 144anti-parallel
Strand 7
B
165 170parallel
Strand 8
B
228 232anti-parallel
Strand 9
B
191 196anti-parallel
Strand 10
B
204 209anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
40 43parallel
Strand 3
B
87 90parallel
Strand 4
B
14 16parallel
Strand 5
B
116 118parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
40 43parallel
Strand 3
C
87 90parallel
Strand 4
C
14 16parallel
Strand 5
C
116 118parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 144first strand
Strand 2
C
165 170parallel
Strand 3
C
228 232anti-parallel
Strand 4
C
191 196anti-parallel
Strand 5
C
204 209anti-parallel
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