Analysis of interatomic Contacts of Structural Units in PDB entry:
5HWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HWK entry

There are 2 chains in PDB entry 5HWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6HIS 233
B
 SER 6HIS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5HWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
62 66Right-handed alpha
Helix 3
AA3
A
68 79Right-handed alpha
Helix 4
AA4
A
86 89Right-handed 310
Helix 5
AA5
A
100 114Right-handed 310
Helix 6
AA6
A
131 133Right-handed 310
Helix 7
AA7
A
134 145Right-handed alpha
Helix 8
AA8
A
175 186Right-handed alpha
Helix 9
AA9
A
193 206Right-handed alpha
Helix 10
AB1
A
218 233Right-handed alpha
Helix 11
AB2
B
14 19Right-handed alpha
Helix 12
AB3
B
62 67Right-handed alpha
Helix 13
AB4
B
68 79Right-handed alpha
Helix 14
AB5
B
86 89Right-handed 310
Helix 15
AB6
B
100 114Right-handed 310
Helix 16
AB7
B
131 133Right-handed 310
Helix 17
AB8
B
134 144Right-handed alpha
Helix 18
AB9
B
175 186Right-handed alpha
Helix 19
AC1
B
193 206Right-handed alpha
Helix 20
AC2
B
218 233Right-handed alpha
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There are 8 sheets in PDB entry 5HWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 126first strand
Strand 2
A
154 163anti-parallel
Strand 3
A
8 12parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
26 33anti-parallel
Strand 6
A
128 129anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 126first strand
Strand 2
A
154 163anti-parallel
Strand 3
A
147 148anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
54 61anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 192anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
91 99anti-parallel
Strand 3
B
26 33anti-parallel
Strand 4
B
128 129anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 43first strand
Strand 2
B
54 61anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 126first strand
Strand 2
B
154 162anti-parallel
Strand 3
B
147 148anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
191 192anti-parallel
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