Analysis of interatomic Contacts of Structural Units in PDB entry:
5HWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HWM entry

There are 4 chains in PDB entry 5HWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 304
B
 MET 1ALA 303
C
 MET 1ARG 301
D
 MET 1ALA 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 5HWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
56 60Right-handed 310
Helix 4
AA4
A
61 62Right-handed 310
Helix 5
AA5
A
63 76Right-handed alpha
Helix 6
AA6
A
88 102Right-handed alpha
Helix 7
AA7
A
118 133Right-handed alpha
Helix 8
AA8
A
148 159Right-handed alpha
Helix 9
AA9
A
171 183Right-handed alpha
Helix 10
AB1
A
184 186Right-handed 310
Helix 11
AB2
A
195 205Right-handed alpha
Helix 12
AB3
A
212 217Right-handed 310
Helix 13
AB4
A
218 231Right-handed alpha
Helix 14
AB5
A
233 244Right-handed alpha
Helix 15
AB6
A
244 253Right-handed alpha
Helix 16
AB7
A
257 270Right-handed alpha
Helix 17
AB8
A
285 297Right-handed alpha
Helix 18
AB9
A
298 300Right-handed 310
Helix 19
AC1
B
2 11Right-handed alpha
Helix 20
AC2
B
29 42Right-handed alpha
Helix 21
AC3
B
56 60Right-handed 310
Helix 22
AC4
B
63 77Right-handed alpha
Helix 23
AC5
B
88 102Right-handed alpha
Helix 24
AC6
B
118 132Right-handed alpha
Helix 25
AC7
B
148 159Right-handed alpha
Helix 26
AC8
B
171 183Right-handed alpha
Helix 27
AC9
B
184 186Right-handed 310
Helix 28
AD1
B
194 197Right-handed 310
Helix 29
AD2
B
198 205Right-handed alpha
Helix 30
AD3
B
212 217Right-handed 310
Helix 31
AD4
B
218 232Right-handed alpha
Helix 32
AD5
B
233 244Right-handed alpha
Helix 33
AD6
B
244 253Right-handed alpha
Helix 34
AD7
B
257 270Right-handed alpha
Helix 35
AD8
B
285 297Right-handed alpha
Helix 36
AD9
B
298 300Right-handed 310
Helix 37
AE1
C
2 11Right-handed alpha
Helix 38
AE2
C
29 42Right-handed alpha
Helix 39
AE3
C
56 60Right-handed 310
Helix 40
AE4
C
61 62Right-handed 310
Helix 41
AE5
C
63 77Right-handed alpha
Helix 42
AE6
C
88 102Right-handed alpha
Helix 43
AE7
C
118 131Right-handed alpha
Helix 44
AE8
C
148 159Right-handed alpha
Helix 45
AE9
C
171 183Right-handed alpha
Helix 46
AF1
C
184 186Right-handed 310
Helix 47
AF2
C
194 197Right-handed 310
Helix 48
AF3
C
198 205Right-handed alpha
Helix 49
AF4
C
212 217Right-handed 310
Helix 50
AF5
C
218 232Right-handed alpha
Helix 51
AF6
C
233 244Right-handed alpha
Helix 52
AF7
C
244 253Right-handed alpha
Helix 53
AF8
C
257 270Right-handed alpha
Helix 54
AF9
C
285 297Right-handed alpha
Helix 55
AG1
C
298 300Right-handed 310
Helix 56
AG2
D
2 11Right-handed alpha
Helix 57
AG3
D
29 42Right-handed alpha
Helix 58
AG4
D
56 60Right-handed 310
Helix 59
AG5
D
63 75Right-handed alpha
Helix 60
AG6
D
88 101Right-handed alpha
Helix 61
AG7
D
118 132Right-handed alpha
Helix 62
AG8
D
148 157Right-handed alpha
Helix 63
AG9
D
171 183Right-handed alpha
Helix 64
AH1
D
184 186Right-handed 310
Helix 65
AH2
D
195 205Right-handed alpha
Helix 66
AH3
D
213 217Right-handed 310
Helix 67
AH4
D
218 232Right-handed alpha
Helix 68
AH5
D
233 244Right-handed alpha
Helix 69
AH6
D
244 253Right-handed alpha
Helix 70
AH7
D
257 270Right-handed alpha
Helix 71
AH8
D
285 297Right-handed alpha
Helix 72
AH9
D
298 300Right-handed 310
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There are 4 sheets in PDB entry 5HWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
47 50parallel
Strand 3
A
80 85parallel
Strand 4
A
106 109parallel
Strand 5
A
136 141parallel
Strand 6
A
162 167parallel
Strand 7
A
187 190parallel
Strand 8
A
209 210parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
47 50parallel
Strand 3
B
80 85parallel
Strand 4
B
106 109parallel
Strand 5
B
136 141parallel
Strand 6
B
162 167parallel
Strand 7
B
187 190parallel
Strand 8
B
209 210parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
80 85parallel
Strand 3
C
106 109parallel
Strand 4
C
136 141parallel
Strand 5
C
162 167parallel
Strand 6
C
187 190parallel
Strand 7
C
209 210parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 50first strand
Strand 2
D
80 85parallel
Strand 3
D
106 109parallel
Strand 4
D
136 141parallel
Strand 5
D
162 167parallel
Strand 6
D
187 190parallel
Strand 7
D
209 210parallel
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