Analysis of interatomic Contacts of Structural Units in PDB entry:
5HWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HWP entry

There are 2 chains in PDB entry 5HWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ALA 114
A
 TYR 116GLY 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5HWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 28Right-handed alpha
Helix 2
AA2
A
31 37Right-handed alpha
Helix 3
AA3
A
52 68Right-handed alpha
Helix 4
AA4
A
71 73Right-handed 310
Helix 5
AA5
A
91 100Right-handed alpha
Helix 6
AA6
A
113 115Right-handed 310
Helix 7
AA7
A
116 131Right-handed alpha
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
204 230Right-handed alpha
Helix 10
AB1
A
239 244Right-handed 310
Helix 11
AB2
A
255 272Right-handed alpha
Helix 12
AB3
A
274 278Right-handed 310
Helix 13
AB4
A
279 288Right-handed alpha
Helix 14
AB5
A
289 297Right-handed alpha
Helix 15
AB6
A
298 301Right-handed 310
Helix 16
AB7
A
303 307Right-handed 310
Helix 17
AB8
A
310 312Right-handed 310
Helix 18
AB9
A
313 331Right-handed alpha
Helix 19
AC1
A
356 365Right-handed alpha
Helix 20
AC2
A
365 372Right-handed alpha
Helix 21
AC3
A
377 387Right-handed alpha
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There are 5 sheets in PDB entry 5HWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
75 81parallel
Strand 3
A
138 147parallel
Strand 4
A
160 169anti-parallel
Strand 5
A
6 13anti-parallel
Strand 6
A
175 177anti-parallel
Strand 7
A
345 352anti-parallel
Strand 8
A
183 186anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
75 81parallel
Strand 3
A
138 147parallel
Strand 4
A
160 169anti-parallel
Strand 5
A
6 13anti-parallel
Strand 6
A
175 177anti-parallel
Strand 7
A
345 352anti-parallel
Strand 8
A
334 341anti-parallel
Strand 9
A
247 249parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
17 20anti-parallel
Strand 3
A
374 375parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
202 203anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 408first strand
Strand 2
A
411 416anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il