Analysis of interatomic Contacts of Structural Units in PDB entry:
5HX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HX5 entry

There are 2 chains in PDB entry 5HX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 190GLU 373
B
 ASN 190GLU 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5HX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
196 205Right-handed alpha
Helix 2
AA2
A
208 213Right-handed 310
Helix 3
AA3
A
249 262Right-handed alpha
Helix 4
AA4
A
280 293Right-handed alpha
Helix 5
AA5
A
311 324Right-handed alpha
Helix 6
AA6
A
332 343Right-handed alpha
Helix 7
AA7
A
356 373Right-handed alpha
Helix 8
AA8
B
196 205Right-handed alpha
Helix 9
AA9
B
249 262Right-handed alpha
Helix 10
AB1
B
280 293Right-handed alpha
Helix 11
AB2
B
311 324Right-handed alpha
Helix 12
AB3
B
332 343Right-handed alpha
Helix 13
AB4
B
356 373Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5HX5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 239first strand
Strand 2
A
217 225anti-parallel
Strand 3
A
268 277anti-parallel
Strand 4
A
297 305parallel
Strand 5
A
327 330parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 239first strand
Strand 2
B
217 226anti-parallel
Strand 3
B
267 275anti-parallel
Strand 4
B
297 303parallel
Strand 5
B
327 330parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il