Analysis of interatomic Contacts of Structural Units in PDB entry:
5HXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HXD entry

There are 2 chains in PDB entry 5HXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 237
B
 MET 1ASP 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5HXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
52 66Right-handed alpha
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
80 86Right-handed alpha
Helix 5
AA5
A
96 100Right-handed 310
Helix 6
AA6
A
135 149Right-handed alpha
Helix 7
AA7
A
169 179Right-handed alpha
Helix 8
AA8
A
194 202Right-handed alpha
Helix 9
AA9
A
215 223Right-handed alpha
Helix 10
AB1
A
223 231Right-handed alpha
Helix 11
AB2
B
6 10Right-handed 310
Helix 12
AB3
B
53 64Right-handed alpha
Helix 13
AB4
B
67 71Right-handed 310
Helix 14
AB5
B
80 86Right-handed alpha
Helix 15
AB6
B
96 100Right-handed 310
Helix 16
AB7
B
116 120Right-handed 310
Helix 17
AB8
B
135 149Right-handed alpha
Helix 18
AB9
B
169 180Right-handed alpha
Helix 19
AC1
B
194 202Right-handed alpha
Helix 20
AC2
B
215 223Right-handed alpha
Helix 21
AC3
B
223 231Right-handed alpha
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There are 6 sheets in PDB entry 5HXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
28 31anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
43 45parallel
Strand 3
A
153 157parallel
Strand 4
A
206 210parallel
Strand 5
A
162 164anti-parallel
Strand 6
A
183 184parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
124 127anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
28 31anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
43 45parallel
Strand 3
B
152 157parallel
Strand 4
B
205 210parallel
Strand 5
B
162 164anti-parallel
Strand 6
B
183 184parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
124 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il