Analysis of interatomic Contacts of Structural Units in PDB entry:
5HXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HXX entry

There are 2 chains in PDB entry 5HXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4HIS 427
B
 VAL 4ASN 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5HXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
10 31Right-handed alpha
Helix 3
AA3
A
43 49Right-handed alpha
Helix 4
AA4
A
50 56Right-handed 310
Helix 5
AA5
A
79 91Right-handed alpha
Helix 6
AA6
A
93 95Right-handed 310
Helix 7
AA7
A
103 119Right-handed alpha
Helix 8
AA8
A
126 130Right-handed 310
Helix 9
AA9
A
142 152Right-handed alpha
Helix 10
AB1
A
167 175Right-handed alpha
Helix 11
AB2
A
198 208Right-handed alpha
Helix 12
AB3
A
237 245Right-handed alpha
Helix 13
AB4
A
273 288Right-handed alpha
Helix 14
AB5
A
292 304Right-handed alpha
Helix 15
AB6
A
305 336Right-handed alpha
Helix 16
AB7
A
337 339Right-handed 310
Helix 17
AB8
A
360 371Right-handed alpha
Helix 18
AB9
A
382 386Right-handed 310
Helix 19
AC1
A
401 427Right-handed alpha
Helix 20
AC2
B
5 9Right-handed 310
Helix 21
AC3
B
10 31Right-handed alpha
Helix 22
AC4
B
43 49Right-handed alpha
Helix 23
AC5
B
50 56Right-handed 310
Helix 24
AC6
B
79 91Right-handed alpha
Helix 25
AC7
B
93 95Right-handed 310
Helix 26
AC8
B
103 118Right-handed alpha
Helix 27
AC9
B
126 130Right-handed 310
Helix 28
AD1
B
142 152Right-handed alpha
Helix 29
AD2
B
167 175Right-handed alpha
Helix 30
AD3
B
198 208Right-handed alpha
Helix 31
AD4
B
237 245Right-handed alpha
Helix 32
AD5
B
273 288Right-handed alpha
Helix 33
AD6
B
292 304Right-handed alpha
Helix 34
AD7
B
305 336Right-handed alpha
Helix 35
AD8
B
337 339Right-handed 310
Helix 36
AD9
B
360 371Right-handed alpha
Helix 37
AE1
B
382 386Right-handed 310
Helix 38
AE2
B
401 426Right-handed alpha
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There are 6 sheets in PDB entry 5HXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
373 374parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
268 271anti-parallel
Strand 3
A
251 256anti-parallel
Strand 4
A
216 220parallel
Strand 5
A
180 185parallel
Strand 6
A
134 139parallel
Strand 7
A
155 162parallel
Strand 8
A
165 166anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
352 355anti-parallel
Strand 3
A
392 395anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
373 374parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
268 272anti-parallel
Strand 3
B
251 256anti-parallel
Strand 4
B
216 220parallel
Strand 5
B
180 185parallel
Strand 6
B
134 139parallel
Strand 7
B
155 162parallel
Strand 8
B
165 166anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 343first strand
Strand 2
B
352 355anti-parallel
Strand 3
B
392 395anti-parallel
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