Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HY0 entry

There are 4 chains in PDB entry 5HY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 14	ALA 390
B	ARG 14	ALA 390
C	ARG 14	PRO 389
D	SER 12	ALA 390

There are 51 helices in PDB entry 5HY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	40	Right-handed alpha
Helix 2	AA2	A	44	46	Right-handed 310
Helix 3	AA3	A	63	82	Right-handed alpha
Helix 4	AA4	A	84	89	Right-handed 310
Helix 5	AA5	A	139	143	Right-handed 310
Helix 6	AA6	A	145	163	Right-handed alpha
Helix 7	AA7	A	167	169	Right-handed 310
Helix 8	AA8	A	182	192	Right-handed alpha
Helix 9	AA9	A	209	224	Right-handed alpha
Helix 10	AB1	A	228	232	Right-handed 310
Helix 11	AB2	A	287	297	Right-handed alpha
Helix 12	AB3	A	306	312	Right-handed alpha
Helix 13	AB4	A	340	358	Right-handed alpha
Helix 14	AB5	B	31	40	Right-handed alpha
Helix 15	AB6	B	44	46	Right-handed 310
Helix 16	AB7	B	63	82	Right-handed alpha
Helix 17	AB8	B	84	89	Right-handed 310
Helix 18	AB9	B	145	164	Right-handed alpha
Helix 19	AC1	B	167	169	Right-handed 310
Helix 20	AC2	B	182	191	Right-handed alpha
Helix 21	AC3	B	210	224	Right-handed alpha
Helix 22	AC4	B	228	232	Right-handed 310
Helix 23	AC5	B	287	297	Right-handed alpha
Helix 24	AC6	B	306	311	Right-handed alpha
Helix 25	AC7	B	340	358	Right-handed alpha
Helix 26	AC8	C	31	40	Right-handed alpha
Helix 27	AC9	C	44	46	Right-handed 310
Helix 28	AD1	C	63	82	Right-handed alpha
Helix 29	AD2	C	87	92	Right-handed alpha
Helix 30	AD3	C	139	143	Right-handed 310
Helix 31	AD4	C	145	163	Right-handed alpha
Helix 32	AD5	C	167	169	Right-handed 310
Helix 33	AD6	C	182	192	Right-handed alpha
Helix 34	AD7	C	210	224	Right-handed alpha
Helix 35	AD8	C	228	232	Right-handed 310
Helix 36	AD9	C	287	297	Right-handed alpha
Helix 37	AE1	C	306	311	Right-handed alpha
Helix 38	AE2	C	340	358	Right-handed alpha
Helix 39	AE3	D	31	40	Right-handed alpha
Helix 40	AE4	D	44	46	Right-handed 310
Helix 41	AE5	D	63	82	Right-handed alpha
Helix 42	AE6	D	87	92	Right-handed alpha
Helix 43	AE7	D	139	143	Right-handed 310
Helix 44	AE8	D	145	163	Right-handed alpha
Helix 45	AE9	D	167	169	Right-handed 310
Helix 46	AF1	D	182	192	Right-handed alpha
Helix 47	AF2	D	209	224	Right-handed alpha
Helix 48	AF3	D	228	232	Right-handed 310
Helix 49	AF4	D	287	297	Right-handed alpha
Helix 50	AF5	D	306	311	Right-handed alpha
Helix 51	AF6	D	340	358	Right-handed alpha

There are 16 sheets in PDB entry 5HY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	24	first strand
Strand 2	A	107	116	anti-parallel
Strand 3	A	48	55	anti-parallel
Strand 4	A	93	98	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	134	first strand
Strand 2	A	260	267	anti-parallel
Strand 3	A	171	178	anti-parallel
Strand 4	A	248	252	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	281	first strand
Strand 2	A	379	386	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	363	366	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	331	332	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	24	first strand
Strand 2	B	107	116	anti-parallel
Strand 3	B	48	55	anti-parallel
Strand 4	B	93	98	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	134	first strand
Strand 2	B	260	267	anti-parallel
Strand 3	B	171	178	anti-parallel
Strand 4	B	248	252	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	281	first strand
Strand 2	B	379	386	anti-parallel
Strand 3	B	313	320	anti-parallel
Strand 4	B	363	366	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	331	332	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	24	first strand
Strand 2	C	107	116	anti-parallel
Strand 3	C	48	55	anti-parallel
Strand 4	C	93	98	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	134	first strand
Strand 2	C	260	267	anti-parallel
Strand 3	C	171	178	anti-parallel
Strand 4	C	248	252	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	281	first strand
Strand 2	C	379	386	anti-parallel
Strand 3	C	313	320	anti-parallel
Strand 4	C	363	366	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	331	332	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	24	first strand
Strand 2	D	107	116	anti-parallel
Strand 3	D	48	55	anti-parallel
Strand 4	D	93	98	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	134	first strand
Strand 2	D	260	267	anti-parallel
Strand 3	D	171	178	anti-parallel
Strand 4	D	248	252	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	281	first strand
Strand 2	D	379	386	anti-parallel
Strand 3	D	313	320	anti-parallel
Strand 4	D	363	366	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	328	first strand
Strand 2	D	331	332	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY0