Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HY1 entry

There is 1 chain in PDB entry 5HY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5HY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 27Right-handed alpha
Helix 2
AA2
A
31 33Right-handed 310
Helix 3
AA3
A
51 68Right-handed alpha
Helix 4
AA4
A
71 77Right-handed alpha
Helix 5
AA5
A
101 105Right-handed 310
Helix 6
AA6
A
124 128Right-handed 310
Helix 7
AA7
A
130 148Right-handed alpha
Helix 8
AA8
A
152 154Right-handed 310
Helix 9
AA9
A
167 177Right-handed alpha
Helix 10
AB1
A
185 205Right-handed alpha
Helix 11
AB2
A
212 216Right-handed 310
Helix 12
AB3
A
265 276Right-handed alpha
Helix 13
AB4
A
285 289Right-handed 310
Helix 14
AB5
A
314 318Right-handed 310
Helix 15
AB6
A
322 340Right-handed alpha
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There are 4 sheets in PDB entry 5HY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
35 42anti-parallel
Strand 4
A
80 84parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 119first strand
Strand 2
A
239 247anti-parallel
Strand 3
A
156 163anti-parallel
Strand 4
A
227 231parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 260first strand
Strand 2
A
359 366anti-parallel
Strand 3
A
293 300anti-parallel
Strand 4
A
345 348parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
311 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il