Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HY2 entry

There are 2 chains in PDB entry 5HY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13ALA 390
B
 ARG 14ALA 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5HY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
63 82Right-handed alpha
Helix 4
AA4
A
87 92Right-handed alpha
Helix 5
AA5
A
145 163Right-handed alpha
Helix 6
AA6
A
167 169Right-handed 310
Helix 7
AA7
A
211 224Right-handed alpha
Helix 8
AA8
A
287 297Right-handed alpha
Helix 9
AA9
A
306 312Right-handed alpha
Helix 10
AB1
A
340 358Right-handed alpha
Helix 11
AB2
B
31 40Right-handed alpha
Helix 12
AB3
B
44 46Right-handed 310
Helix 13
AB4
B
63 82Right-handed alpha
Helix 14
AB5
B
87 92Right-handed alpha
Helix 15
AB6
B
145 163Right-handed alpha
Helix 16
AB7
B
167 169Right-handed 310
Helix 17
AB8
B
211 224Right-handed alpha
Helix 18
AB9
B
287 297Right-handed alpha
Helix 19
AC1
B
306 312Right-handed alpha
Helix 20
AC2
B
340 358Right-handed alpha
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There are 8 sheets in PDB entry 5HY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 24first strand
Strand 2
A
107 116anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
93 98parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 134first strand
Strand 2
A
260 267anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
248 252parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
379 386anti-parallel
Strand 3
A
313 320anti-parallel
Strand 4
A
363 366parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
331 332anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 24first strand
Strand 2
B
107 116anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
93 98parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 134first strand
Strand 2
B
260 267anti-parallel
Strand 3
B
171 178anti-parallel
Strand 4
B
248 252parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 281first strand
Strand 2
B
379 386anti-parallel
Strand 3
B
313 320anti-parallel
Strand 4
B
363 366parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 328first strand
Strand 2
B
331 332anti-parallel
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