Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HY3 entry

There are 2 chains in PDB entry 5HY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 90LYS 345
B
 LEU 3ARG 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5HY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 114Right-handed alpha
Helix 2
AA2
A
159 173Right-handed alpha
Helix 3
AA3
A
174 186Right-handed alpha
Helix 4
AA4
A
191 203Right-handed alpha
Helix 5
AA5
A
211 222Right-handed alpha
Helix 6
AA6
A
222 227Right-handed alpha
Helix 7
AA7
A
234 257Right-handed alpha
Helix 8
AA8
A
264 268Right-handed alpha
Helix 9
AA9
A
280 283Right-handed 310
Helix 10
AB1
A
289 310Right-handed alpha
Helix 11
AB2
A
322 344Right-handed alpha
Helix 12
AB3
B
25 27Right-handed 310
Helix 13
AB4
B
28 41Right-handed alpha
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There are 3 sheets in PDB entry 5HY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
92 96anti-parallel
Strand 3
B
51 57anti-parallel
Strand 4
B
43 48anti-parallel
Strand 5
B
4 11anti-parallel
Strand 6
B
17 24anti-parallel
Strand 7
A
316 317parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
131 135anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
277 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il