Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HY4 entry

There are 8 chains in PDB entry 5HY4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 14	ALA 390
B	ARG 14	PRO 389
C	ARG 14	LEU 388
D	ARG 14	ARG 387
E	ARG 14	LEU 388
F	ALA 13	ALA 390
G	TYR 15	ARG 386
H	ARG 14	PRO 389

There are100 helices in PDB entry 5HY4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	40	Right-handed alpha
Helix 2	AA2	A	44	46	Right-handed 310
Helix 3	AA3	A	63	82	Right-handed alpha
Helix 4	AA4	A	84	91	Right-handed 310
Helix 5	AA5	A	139	143	Right-handed 310
Helix 6	AA6	A	145	164	Right-handed alpha
Helix 7	AA7	A	167	169	Right-handed 310
Helix 8	AA8	A	182	192	Right-handed alpha
Helix 9	AA9	A	209	224	Right-handed alpha
Helix 10	AB1	A	228	232	Right-handed 310
Helix 11	AB2	A	287	297	Right-handed alpha
Helix 12	AB3	A	306	312	Right-handed alpha
Helix 13	AB4	A	340	358	Right-handed alpha
Helix 14	AB5	B	31	40	Right-handed alpha
Helix 15	AB6	B	44	46	Right-handed 310
Helix 16	AB7	B	63	82	Right-handed alpha
Helix 17	AB8	B	84	91	Right-handed 310
Helix 18	AB9	B	139	143	Right-handed 310
Helix 19	AC1	B	145	164	Right-handed alpha
Helix 20	AC2	B	167	169	Right-handed 310
Helix 21	AC3	B	182	192	Right-handed alpha
Helix 22	AC4	B	209	224	Right-handed alpha
Helix 23	AC5	B	228	232	Right-handed 310
Helix 24	AC6	B	287	298	Right-handed alpha
Helix 25	AC7	B	306	312	Right-handed alpha
Helix 26	AC8	B	340	358	Right-handed alpha
Helix 27	AC9	C	31	40	Right-handed alpha
Helix 28	AD1	C	44	46	Right-handed 310
Helix 29	AD2	C	63	82	Right-handed alpha
Helix 30	AD3	C	84	88	Right-handed 310
Helix 31	AD4	C	139	143	Right-handed 310
Helix 32	AD5	C	145	163	Right-handed alpha
Helix 33	AD6	C	167	169	Right-handed 310
Helix 34	AD7	C	182	192	Right-handed alpha
Helix 35	AD8	C	210	224	Right-handed alpha
Helix 36	AD9	C	287	297	Right-handed alpha
Helix 37	AE1	C	306	312	Right-handed alpha
Helix 38	AE2	C	340	358	Right-handed alpha
Helix 39	AE3	D	31	40	Right-handed alpha
Helix 40	AE4	D	44	46	Right-handed 310
Helix 41	AE5	D	63	82	Right-handed alpha
Helix 42	AE6	D	84	91	Right-handed 310
Helix 43	AE7	D	139	143	Right-handed 310
Helix 44	AE8	D	145	163	Right-handed alpha
Helix 45	AE9	D	167	169	Right-handed 310
Helix 46	AF1	D	210	224	Right-handed alpha
Helix 47	AF2	D	228	232	Right-handed 310
Helix 48	AF3	D	287	298	Right-handed alpha
Helix 49	AF4	D	306	312	Right-handed alpha
Helix 50	AF5	D	340	358	Right-handed alpha
Helix 51	AF6	E	31	40	Right-handed alpha
Helix 52	AF7	E	44	46	Right-handed 310
Helix 53	AF8	E	63	82	Right-handed alpha
Helix 54	AF9	E	84	91	Right-handed 310
Helix 55	AG1	E	139	143	Right-handed 310
Helix 56	AG2	E	145	163	Right-handed alpha
Helix 57	AG3	E	167	169	Right-handed 310
Helix 58	AG4	E	182	192	Right-handed alpha
Helix 59	AG5	E	210	224	Right-handed alpha
Helix 60	AG6	E	228	232	Right-handed 310
Helix 61	AG7	E	287	298	Right-handed alpha
Helix 62	AG8	E	306	312	Right-handed alpha
Helix 63	AG9	E	340	358	Right-handed alpha
Helix 64	AH1	F	31	40	Right-handed alpha
Helix 65	AH2	F	44	46	Right-handed 310
Helix 66	AH3	F	63	82	Right-handed alpha
Helix 67	AH4	F	84	91	Right-handed 310
Helix 68	AH5	F	139	143	Right-handed 310
Helix 69	AH6	F	145	164	Right-handed alpha
Helix 70	AH7	F	167	169	Right-handed 310
Helix 71	AH8	F	182	193	Right-handed alpha
Helix 72	AH9	F	209	224	Right-handed alpha
Helix 73	AI1	F	228	232	Right-handed 310
Helix 74	AI2	F	287	298	Right-handed alpha
Helix 75	AI3	F	306	312	Right-handed alpha
Helix 76	AI4	F	340	358	Right-handed alpha
Helix 77	AI5	G	31	40	Right-handed alpha
Helix 78	AI6	G	44	46	Right-handed 310
Helix 79	AI7	G	63	82	Right-handed alpha
Helix 80	AI8	G	84	89	Right-handed 310
Helix 81	AI9	G	139	143	Right-handed 310
Helix 82	AJ1	G	145	162	Right-handed alpha
Helix 83	AJ2	G	167	171	Right-handed 310
Helix 84	AJ3	G	182	192	Right-handed alpha
Helix 85	AJ4	G	209	224	Right-handed alpha
Helix 86	AJ5	G	228	232	Right-handed 310
Helix 87	AJ6	G	287	298	Right-handed alpha
Helix 88	AJ7	G	306	312	Right-handed alpha
Helix 89	AJ8	G	340	358	Right-handed alpha
Helix 90	AJ9	H	31	40	Right-handed alpha
Helix 91	AK1	H	44	46	Right-handed 310
Helix 92	AK2	H	63	82	Right-handed alpha
Helix 93	AK3	H	84	91	Right-handed 310
Helix 94	AK4	H	139	143	Right-handed 310
Helix 95	AK5	H	145	163	Right-handed alpha
Helix 96	AK6	H	167	169	Right-handed 310
Helix 97	AK7	H	209	224	Right-handed alpha
Helix 98	AK8	H	287	298	Right-handed alpha
Helix 99	AK9	H	306	312	Right-handed alpha
Helix 100	AL1	H	340	358	Right-handed alpha

There are 32 sheets in PDB entry 5HY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	24	first strand
Strand 2	A	107	116	anti-parallel
Strand 3	A	48	55	anti-parallel
Strand 4	A	93	98	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	134	first strand
Strand 2	A	260	267	anti-parallel
Strand 3	A	171	178	anti-parallel
Strand 4	A	248	252	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	281	first strand
Strand 2	A	379	386	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	363	366	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	331	332	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	24	first strand
Strand 2	B	107	116	anti-parallel
Strand 3	B	48	55	anti-parallel
Strand 4	B	93	98	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	137	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	171	178	anti-parallel
Strand 4	B	248	252	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	281	first strand
Strand 2	B	379	386	anti-parallel
Strand 3	B	313	322	anti-parallel
Strand 4	B	363	369	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	331	332	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	24	first strand
Strand 2	C	107	116	anti-parallel
Strand 3	C	48	55	anti-parallel
Strand 4	C	93	98	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	134	first strand
Strand 2	C	260	267	anti-parallel
Strand 3	C	171	178	anti-parallel
Strand 4	C	248	252	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	281	first strand
Strand 2	C	379	386	anti-parallel
Strand 3	C	313	320	anti-parallel
Strand 4	C	363	366	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	331	332	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	24	first strand
Strand 2	D	107	116	anti-parallel
Strand 3	D	48	55	anti-parallel
Strand 4	D	93	98	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	137	first strand
Strand 2	D	258	267	anti-parallel
Strand 3	D	171	178	anti-parallel
Strand 4	D	248	252	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	281	first strand
Strand 2	D	379	386	anti-parallel
Strand 3	D	313	320	anti-parallel
Strand 4	D	363	366	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	328	first strand
Strand 2	D	331	332	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	24	first strand
Strand 2	E	107	116	anti-parallel
Strand 3	E	48	55	anti-parallel
Strand 4	E	93	98	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	134	first strand
Strand 2	E	260	267	anti-parallel
Strand 3	E	171	178	anti-parallel
Strand 4	E	248	252	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	281	first strand
Strand 2	E	379	386	anti-parallel
Strand 3	E	313	320	anti-parallel
Strand 4	E	363	366	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	328	first strand
Strand 2	E	331	332	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	24	first strand
Strand 2	F	107	116	anti-parallel
Strand 3	F	48	55	anti-parallel
Strand 4	F	93	98	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	134	first strand
Strand 2	F	260	267	anti-parallel
Strand 3	F	171	179	anti-parallel
Strand 4	F	248	253	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	274	281	first strand
Strand 2	F	379	386	anti-parallel
Strand 3	F	313	320	anti-parallel
Strand 4	F	363	366	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	327	328	first strand
Strand 2	F	331	332	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	107	112	anti-parallel
Strand 3	G	48	55	anti-parallel
Strand 4	G	93	98	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	134	first strand
Strand 2	G	260	265	anti-parallel
Strand 3	G	173	178	anti-parallel
Strand 4	G	248	252	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	275	281	first strand
Strand 2	G	379	385	anti-parallel
Strand 3	G	313	321	anti-parallel
Strand 4	G	363	367	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	327	328	first strand
Strand 2	G	331	332	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	24	first strand
Strand 2	H	107	116	anti-parallel
Strand 3	H	48	55	anti-parallel
Strand 4	H	93	98	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	137	first strand
Strand 2	H	258	267	anti-parallel
Strand 3	H	171	178	anti-parallel
Strand 4	H	248	252	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	274	281	first strand
Strand 2	H	379	386	anti-parallel
Strand 3	H	313	320	anti-parallel
Strand 4	H	363	366	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	327	328	first strand
Strand 2	H	331	332	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HY4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY4