Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HY5 entry

There are 2 chains in PDB entry 5HY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4MET 519
B
 PRO 6MET 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5HY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
55 63Right-handed alpha
Helix 3
AA3
A
66 71Right-handed alpha
Helix 4
AA4
A
72 75Right-handed 310
Helix 5
AA5
A
109 117Right-handed alpha
Helix 6
AA6
A
121 127Right-handed alpha
Helix 7
AA7
A
128 136Right-handed alpha
Helix 8
AA8
A
162 170Right-handed alpha
Helix 9
AA9
A
179 193Right-handed alpha
Helix 10
AB1
A
234 238Right-handed 310
Helix 11
AB2
A
310 323Right-handed alpha
Helix 12
AB3
A
324 327Right-handed 310
Helix 13
AB4
A
365 380Right-handed alpha
Helix 14
AB5
A
387 415Right-handed alpha
Helix 15
AB6
A
421 426Right-handed alpha
Helix 16
AB7
A
427 429Right-handed 310
Helix 17
AB8
A
433 446Right-handed alpha
Helix 18
AB9
A
461 473Right-handed alpha
Helix 19
AC1
A
480 485Right-handed 310
Helix 20
AC2
A
488 509Right-handed alpha
Helix 21
AC3
A
511 518Right-handed alpha
Helix 22
AC4
B
16 29Right-handed alpha
Helix 23
AC5
B
55 63Right-handed alpha
Helix 24
AC6
B
66 71Right-handed alpha
Helix 25
AC7
B
72 75Right-handed 310
Helix 26
AC8
B
109 117Right-handed alpha
Helix 27
AC9
B
121 127Right-handed alpha
Helix 28
AD1
B
128 135Right-handed alpha
Helix 29
AD2
B
179 193Right-handed alpha
Helix 30
AD3
B
234 238Right-handed 310
Helix 31
AD4
B
269 274Right-handed alpha
Helix 32
AD5
B
310 323Right-handed alpha
Helix 33
AD6
B
324 327Right-handed 310
Helix 34
AD7
B
365 380Right-handed alpha
Helix 35
AD8
B
387 416Right-handed alpha
Helix 36
AD9
B
421 426Right-handed alpha
Helix 37
AE1
B
427 429Right-handed 310
Helix 38
AE2
B
433 447Right-handed alpha
Helix 39
AE3
B
461 473Right-handed alpha
Helix 40
AE4
B
480 485Right-handed 310
Helix 41
AE5
B
488 509Right-handed alpha
Helix 42
AE6
B
511 519Right-handed alpha
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There are 12 sheets in PDB entry 5HY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
33 39parallel
Strand 3
A
7 12parallel
Strand 4
A
229 232parallel
Strand 5
A
349 351parallel
Strand 6
A
345 346anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
175 177anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
278 283parallel
Strand 4
A
287 293anti-parallel
Strand 5
A
297 304anti-parallel
Strand 6
A
260 267anti-parallel
Strand 7
A
332 335anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
107 108anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 208first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
224 226anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
339 341anti-parallel
Strand 3
A
357 358anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 200first strand
Strand 2
B
33 39parallel
Strand 3
B
7 12parallel
Strand 4
B
229 232parallel
Strand 5
B
349 351parallel
Strand 6
B
345 346anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
175 177anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 97first strand
Strand 2
B
81 85anti-parallel
Strand 3
B
278 284parallel
Strand 4
B
287 293anti-parallel
Strand 5
B
297 304anti-parallel
Strand 6
B
260 267anti-parallel
Strand 7
B
332 335anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
107 108anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 208first strand
Strand 2
B
214 219anti-parallel
Strand 3
B
224 226anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 251first strand
Strand 2
B
339 341anti-parallel
Strand 3
B
357 358anti-parallel
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