Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HY7 entry

There are 4 chains in PDB entry 5HY7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 7	PHE 1213
D	THR 27	PRO 81
B	ASN 7	PHE 1213
C	THR 26	PRO 80

There are 32 helices in PDB entry 5HY7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	449	452	Right-handed 310
Helix 2	AA2	A	842	847	Right-handed alpha
Helix 3	AA3	A	893	896	Right-handed 310
Helix 4	AA4	A	928	931	Right-handed 310
Helix 5	AA5	A	1057	1061	Right-handed 310
Helix 6	AA6	A	1130	1148	Right-handed alpha
Helix 7	AA7	A	1155	1160	Right-handed alpha
Helix 8	AA8	A	1172	1176	Right-handed alpha
Helix 9	AA9	A	1177	1181	Right-handed 310
Helix 10	AB1	A	1182	1194	Right-handed alpha
Helix 11	AB2	A	1196	1212	Right-handed alpha
Helix 12	AB3	D	28	46	Right-handed alpha
Helix 13	AB4	D	46	58	Right-handed alpha
Helix 14	AB5	D	60	72	Right-handed alpha
Helix 15	AB6	B	196	201	Right-handed alpha
Helix 16	AB7	B	206	210	Right-handed 310
Helix 17	AB8	B	247	251	Right-handed 310
Helix 18	AB9	B	392	394	Right-handed 310
Helix 19	AC1	B	449	452	Right-handed 310
Helix 20	AC2	B	820	825	Right-handed 310
Helix 21	AC3	B	842	847	Right-handed alpha
Helix 22	AC4	B	893	896	Right-handed 310
Helix 23	AC5	B	1055	1062	Right-handed alpha
Helix 24	AC6	B	1130	1148	Right-handed alpha
Helix 25	AC7	B	1155	1160	Right-handed alpha
Helix 26	AC8	B	1172	1176	Right-handed alpha
Helix 27	AC9	B	1177	1181	Right-handed 310
Helix 28	AD1	B	1182	1194	Right-handed alpha
Helix 29	AD2	B	1196	1212	Right-handed alpha
Helix 30	AD3	C	27	45	Right-handed alpha
Helix 31	AD4	C	45	57	Right-handed alpha
Helix 32	AD5	C	59	70	Right-handed alpha

There are 47 sheets in PDB entry 5HY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1097	1104	first strand
Strand 2	A	1111	1117	anti-parallel
Strand 3	A	1122	1127	anti-parallel
Strand 4	A	10	16	anti-parallel
Strand 5	A	1169	1171	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	36	41	anti-parallel
Strand 3	A	44	51	anti-parallel
Strand 4	A	56	64	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	76	first strand
Strand 2	A	83	88	anti-parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	105	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	136	140	anti-parallel
Strand 3	A	146	153	anti-parallel
Strand 4	A	159	161	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	136	140	anti-parallel
Strand 3	A	146	153	anti-parallel
Strand 4	A	165	166	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	179	first strand
Strand 2	A	188	195	anti-parallel
Strand 3	A	214	221	anti-parallel
Strand 4	A	226	234	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	245	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	262	264	anti-parallel
Strand 4	A	274	275	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	406	407	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	300	first strand
Strand 2	A	308	314	anti-parallel
Strand 3	A	318	328	anti-parallel
Strand 4	A	334	348	anti-parallel
Strand 5	A	388	389	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	358	first strand
Strand 2	A	362	367	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	415	421	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	433	first strand
Strand 2	A	442	447	anti-parallel
Strand 3	A	454	460	anti-parallel
Strand 4	A	786	792	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	471	first strand
Strand 2	A	773	778	anti-parallel
Strand 3	A	765	769	anti-parallel
Strand 4	A	753	757	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	482	first strand
Strand 2	A	493	498	anti-parallel
Strand 3	A	501	506	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	526	first strand
Strand 2	A	536	540	anti-parallel
Strand 3	A	543	548	anti-parallel
Strand 4	A	551	556	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	568	first strand
Strand 2	A	572	577	anti-parallel
Strand 3	A	581	586	anti-parallel
Strand 4	A	594	595	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	568	first strand
Strand 2	A	572	577	anti-parallel
Strand 3	A	581	586	anti-parallel
Strand 4	A	600	601	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	610	first strand
Strand 2	A	623	628	anti-parallel
Strand 3	A	632	637	anti-parallel
Strand 4	A	646	651	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	665	first strand
Strand 2	A	671	679	anti-parallel
Strand 3	A	683	689	anti-parallel
Strand 4	A	696	703	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	716	first strand
Strand 2	A	719	725	anti-parallel
Strand 3	A	729	734	anti-parallel
Strand 4	A	741	745	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	802	first strand
Strand 2	A	809	815	anti-parallel
Strand 3	A	856	863	anti-parallel
Strand 4	A	871	877	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	891	first strand
Strand 2	A	899	907	anti-parallel
Strand 3	A	918	927	anti-parallel
Strand 4	A	932	941	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	945	951	first strand
Strand 2	A	954	959	anti-parallel
Strand 3	A	962	968	anti-parallel
Strand 4	A	973	980	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	992	first strand
Strand 2	A	995	1000	anti-parallel
Strand 3	A	1005	1011	anti-parallel
Strand 4	A	1016	1022	anti-parallel
Strand 5	A	1083	1084	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1029	1034	first strand
Strand 2	A	1039	1044	anti-parallel
Strand 3	A	1048	1053	anti-parallel
Strand 4	A	1086	1091	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1097	1103	first strand
Strand 2	B	1112	1117	anti-parallel
Strand 3	B	1122	1126	anti-parallel
Strand 4	B	10	16	anti-parallel
Strand 5	B	1169	1171	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	44	51	anti-parallel
Strand 4	B	56	64	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	75	first strand
Strand 2	B	84	88	anti-parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	105	113	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	146	153	anti-parallel
Strand 4	B	159	161	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	146	153	anti-parallel
Strand 4	B	165	166	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	179	first strand
Strand 2	B	188	195	anti-parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	226	234	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	255	259	anti-parallel
Strand 3	B	262	267	anti-parallel
Strand 4	B	270	275	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	280	first strand
Strand 2	B	406	407	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	300	first strand
Strand 2	B	308	314	anti-parallel
Strand 3	B	318	328	anti-parallel
Strand 4	B	334	348	anti-parallel
Strand 5	B	388	390	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	358	first strand
Strand 2	B	362	367	anti-parallel
Strand 3	B	372	377	anti-parallel
Strand 4	B	415	421	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	433	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	454	460	anti-parallel
Strand 4	B	786	792	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	471	first strand
Strand 2	B	773	779	anti-parallel
Strand 3	B	764	770	anti-parallel
Strand 4	B	753	758	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	482	first strand
Strand 2	B	493	497	anti-parallel
Strand 3	B	502	505	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	544	545	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	568	first strand
Strand 2	B	572	577	anti-parallel
Strand 3	B	582	586	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	611	first strand
Strand 2	B	623	628	anti-parallel
Strand 3	B	632	637	anti-parallel
Strand 4	B	646	651	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	663	first strand
Strand 2	B	673	679	anti-parallel
Strand 3	B	683	689	anti-parallel
Strand 4	B	696	703	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	716	first strand
Strand 2	B	719	725	anti-parallel
Strand 3	B	729	734	anti-parallel
Strand 4	B	741	745	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	802	first strand
Strand 2	B	809	815	anti-parallel
Strand 3	B	856	863	anti-parallel
Strand 4	B	871	877	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	882	891	first strand
Strand 2	B	899	907	anti-parallel
Strand 3	B	918	927	anti-parallel
Strand 4	B	932	941	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	947	951	first strand
Strand 2	B	954	959	anti-parallel
Strand 3	B	962	968	anti-parallel
Strand 4	B	973	980	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	986	992	first strand
Strand 2	B	995	1000	anti-parallel
Strand 3	B	1004	1011	anti-parallel
Strand 4	B	1016	1022	anti-parallel
Strand 5	B	1083	1084	parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1029	1034	first strand
Strand 2	B	1039	1044	anti-parallel
Strand 3	B	1048	1053	anti-parallel
Strand 4	B	1086	1091	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HY7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HY7