Analysis of interatomic Contacts of Structural Units in PDB entry:
5HYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HYM entry

There is 1 chain in PDB entry 5HYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ARG 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5HYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
51 61Right-handed alpha
Helix 3
AA3
A
63 69Right-handed alpha
Helix 4
AA4
A
94 102Right-handed alpha
Helix 5
AA5
A
110 124Right-handed alpha
Helix 6
AA6
A
168 173Right-handed 310
Helix 7
AA7
A
220 222Right-handed 310
Helix 8
AA8
A
233 238Right-handed alpha
Helix 9
AA9
A
245 247Right-handed 310
Helix 10
AB1
A
248 254Right-handed alpha
Helix 11
AB2
A
257 265Right-handed alpha
Helix 12
AB3
A
293 296Right-handed 310
Helix 13
AB4
A
300 304Right-handed 310
Helix 14
AB5
A
305 329Right-handed alpha
Helix 15
AB6
A
332 363Right-handed alpha
Helix 16
AB7
A
365 379Right-handed alpha
Helix 17
AB8
A
387 392Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5HYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
31 35parallel
Strand 3
A
8 12parallel
Strand 4
A
158 161parallel
Strand 5
A
289 291parallel
Strand 6
A
285 286anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
106 109anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
204 209parallel
Strand 4
A
212 219anti-parallel
Strand 5
A
224 232anti-parallel
Strand 6
A
179 191anti-parallel
Strand 7
A
273 277anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 140first strand
Strand 2
A
143 148anti-parallel
Strand 3
A
153 156anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il