Analysis of interatomic Contacts of Structural Units in PDB entry:
5HYN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HYN entry

There are 7 chains in PDB entry 5HYN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 10	GLU 740
B	LYS 77	ARG 441
C	HIS 561	GLN 685
D	THR 22	PRO 30
E	ARG 1	ARG 6
E	PHE 8	SER 11
F	LYS 10	ILE 150

There are 96 helices in PDB entry 5HYN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	63	Right-handed alpha
Helix 2	AA2	A	134	139	Right-handed alpha
Helix 3	AA3	A	143	153	Right-handed alpha
Helix 4	AA4	A	167	182	Right-handed alpha
Helix 5	AA5	A	221	231	Right-handed alpha
Helix 6	AA6	A	236	249	Right-handed alpha
Helix 7	AA7	A	273	285	Right-handed alpha
Helix 8	AA8	A	331	344	Right-handed alpha
Helix 9	AA9	A	433	448	Right-handed alpha
Helix 10	AB1	A	450	459	Right-handed alpha
Helix 11	AB2	A	462	475	Right-handed alpha
Helix 12	AB3	A	534	539	Right-handed alpha
Helix 13	AB4	A	571	576	Right-handed alpha
Helix 14	AB5	A	648	661	Right-handed alpha
Helix 15	AB6	A	683	687	Right-handed 310
Helix 16	AB7	B	267	280	Right-handed alpha
Helix 17	AB8	B	339	343	Right-handed 310
Helix 18	AB9	C	589	602	Right-handed alpha
Helix 19	AC1	C	609	625	Right-handed alpha
Helix 20	AC2	C	630	650	Right-handed alpha
Helix 21	AC3	C	652	666	Right-handed alpha
Helix 22	AC4	C	671	684	Right-handed alpha
Helix 23	AC5	F	11	63	Right-handed alpha
Helix 24	AC6	F	144	153	Right-handed alpha
Helix 25	AC7	F	167	181	Right-handed alpha
Helix 26	AC8	F	222	231	Right-handed alpha
Helix 27	AC9	F	236	248	Right-handed alpha
Helix 28	AD1	F	273	278	Right-handed alpha
Helix 29	AD2	F	278	285	Right-handed alpha
Helix 30	AD3	F	331	343	Right-handed alpha
Helix 31	AD4	F	433	447	Right-handed alpha
Helix 32	AD5	F	450	459	Right-handed alpha
Helix 33	AD6	F	462	475	Right-handed alpha
Helix 34	AD7	F	534	539	Right-handed alpha
Helix 35	AD8	F	571	576	Right-handed alpha
Helix 36	AD9	F	604	609	Right-handed alpha
Helix 37	AE1	F	648	662	Right-handed alpha
Helix 38	AE2	F	683	687	Right-handed 310
Helix 39	AE3	G	128	130	Right-handed 310
Helix 40	AE4	G	267	280	Right-handed alpha
Helix 41	AE5	G	339	343	Right-handed 310
Helix 42	AE6	H	575	579	Right-handed 310
Helix 43	AE7	H	589	602	Right-handed alpha
Helix 44	AE8	H	607	625	Right-handed alpha
Helix 45	AE9	H	630	650	Right-handed alpha
Helix 46	AF1	H	652	666	Right-handed alpha
Helix 47	AF2	H	671	684	Right-handed alpha
Helix 48	AF3	K	13	63	Right-handed alpha
Helix 49	AF4	K	144	153	Right-handed alpha
Helix 50	AF5	K	167	180	Right-handed alpha
Helix 51	AF6	K	220	231	Right-handed alpha
Helix 52	AF7	K	236	247	Right-handed alpha
Helix 53	AF8	K	273	278	Right-handed alpha
Helix 54	AF9	K	278	285	Right-handed alpha
Helix 55	AG1	K	332	344	Right-handed alpha
Helix 56	AG2	K	433	447	Right-handed alpha
Helix 57	AG3	K	450	459	Right-handed alpha
Helix 58	AG4	K	462	476	Right-handed alpha
Helix 59	AG5	K	534	540	Right-handed alpha
Helix 60	AG6	K	571	576	Right-handed alpha
Helix 61	AG7	K	604	609	Right-handed alpha
Helix 62	AG8	K	648	662	Right-handed alpha
Helix 63	AG9	K	683	687	Right-handed 310
Helix 64	AH1	L	267	280	Right-handed alpha
Helix 65	AH2	L	339	343	Right-handed 310
Helix 66	AH3	M	589	601	Right-handed alpha
Helix 67	AH4	M	607	625	Right-handed alpha
Helix 68	AH5	M	630	650	Right-handed alpha
Helix 69	AH6	M	652	666	Right-handed alpha
Helix 70	AH7	M	670	685	Right-handed alpha
Helix 71	AH8	Q	13	63	Right-handed alpha
Helix 72	AH9	Q	142	153	Right-handed alpha
Helix 73	AI1	Q	167	180	Right-handed alpha
Helix 74	AI2	Q	222	229	Right-handed alpha
Helix 75	AI3	Q	231	235	Right-handed 310
Helix 76	AI4	Q	236	248	Right-handed alpha
Helix 77	AI5	Q	273	278	Right-handed alpha
Helix 78	AI6	Q	278	285	Right-handed alpha
Helix 79	AI7	Q	331	344	Right-handed alpha
Helix 80	AI8	Q	434	447	Right-handed alpha
Helix 81	AI9	Q	450	459	Right-handed alpha
Helix 82	AJ1	Q	462	476	Right-handed alpha
Helix 83	AJ2	Q	534	540	Right-handed alpha
Helix 84	AJ3	Q	571	576	Right-handed alpha
Helix 85	AJ4	Q	604	609	Right-handed alpha
Helix 86	AJ5	Q	648	662	Right-handed alpha
Helix 87	AJ6	Q	683	687	Right-handed 310
Helix 88	AJ7	R	128	130	Right-handed 310
Helix 89	AJ8	R	267	280	Right-handed alpha
Helix 90	AJ9	R	339	343	Right-handed 310
Helix 91	AK1	S	575	579	Right-handed 310
Helix 92	AK2	S	589	603	Right-handed alpha
Helix 93	AK3	S	607	625	Right-handed alpha
Helix 94	AK4	S	630	650	Right-handed alpha
Helix 95	AK5	S	652	666	Right-handed alpha
Helix 96	AK6	S	670	684	Right-handed alpha

There are 48 sheets in PDB entry 5HYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	82	87	anti-parallel
Strand 3	B	82	90	anti-parallel
Strand 4	B	433	439	anti-parallel
Strand 5	B	424	429	anti-parallel
Strand 6	B	413	418	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	B	131	140	parallel
Strand 3	B	120	127	anti-parallel
Strand 4	B	112	117	anti-parallel
Strand 5	B	96	101	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	673	681	parallel
Strand 3	A	643	647	anti-parallel
Strand 4	A	120	121	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	673	681	parallel
Strand 3	A	666	668	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	618	first strand
Strand 2	A	624	628	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	640	first strand
Strand 2	A	705	712	anti-parallel
Strand 3	A	695	702	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	689	first strand
Strand 2	A	723	724	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	154	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	172	176	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	198	first strand
Strand 2	B	205	210	anti-parallel
Strand 3	B	215	219	anti-parallel
Strand 4	B	224	228	anti-parallel
Strand 5	B	292	293	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	244	first strand
Strand 2	B	250	255	anti-parallel
Strand 3	B	260	264	anti-parallel
Strand 4	B	299	301	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	315	first strand
Strand 2	B	318	323	anti-parallel
Strand 3	B	327	333	anti-parallel
Strand 4	B	350	357	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	376	380	anti-parallel
Strand 3	B	386	390	anti-parallel
Strand 4	B	402	404	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	97	first strand
Strand 2	F	82	87	anti-parallel
Strand 3	G	82	90	anti-parallel
Strand 4	G	433	439	anti-parallel
Strand 5	G	424	429	anti-parallel
Strand 6	G	413	418	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	G	132	140	parallel
Strand 3	G	120	126	anti-parallel
Strand 4	G	111	117	anti-parallel
Strand 5	G	96	101	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	673	681	parallel
Strand 3	F	643	647	anti-parallel
Strand 4	F	120	121	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	673	681	parallel
Strand 3	F	666	668	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	614	618	first strand
Strand 2	F	624	628	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	637	640	first strand
Strand 2	F	705	712	anti-parallel
Strand 3	F	695	702	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	688	689	first strand
Strand 2	F	723	724	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	154	first strand
Strand 2	G	161	167	anti-parallel
Strand 3	G	172	176	anti-parallel
Strand 4	G	181	186	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	193	198	first strand
Strand 2	G	205	210	anti-parallel
Strand 3	G	215	219	anti-parallel
Strand 4	G	224	229	anti-parallel
Strand 5	G	292	294	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	244	first strand
Strand 2	G	250	255	anti-parallel
Strand 3	G	260	264	anti-parallel
Strand 4	G	299	301	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	309	315	first strand
Strand 2	G	318	323	anti-parallel
Strand 3	G	327	333	anti-parallel
Strand 4	G	350	357	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	368	370	first strand
Strand 2	G	376	380	anti-parallel
Strand 3	G	386	390	anti-parallel
Strand 4	G	401	404	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	93	97	first strand
Strand 2	K	82	87	anti-parallel
Strand 3	L	82	90	anti-parallel
Strand 4	L	433	439	anti-parallel
Strand 5	L	424	429	anti-parallel
Strand 6	L	413	418	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	99	101	first strand
Strand 2	L	131	140	parallel
Strand 3	L	120	127	anti-parallel
Strand 4	L	111	117	anti-parallel
Strand 5	L	96	101	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	114	115	first strand
Strand 2	K	673	681	parallel
Strand 3	K	643	647	anti-parallel
Strand 4	K	120	121	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	114	115	first strand
Strand 2	K	673	681	parallel
Strand 3	K	666	668	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	614	618	first strand
Strand 2	K	624	628	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	637	640	first strand
Strand 2	K	705	712	anti-parallel
Strand 3	K	695	702	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	688	689	first strand
Strand 2	K	723	724	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	155	first strand
Strand 2	L	160	167	anti-parallel
Strand 3	L	172	176	anti-parallel
Strand 4	L	181	186	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	193	198	first strand
Strand 2	L	205	210	anti-parallel
Strand 3	L	215	219	anti-parallel
Strand 4	L	224	229	anti-parallel
Strand 5	L	292	294	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	239	244	first strand
Strand 2	L	250	255	anti-parallel
Strand 3	L	260	264	anti-parallel
Strand 4	L	299	301	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	309	315	first strand
Strand 2	L	318	323	anti-parallel
Strand 3	L	327	333	anti-parallel
Strand 4	L	350	357	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	368	370	first strand
Strand 2	L	376	380	anti-parallel
Strand 3	L	386	390	anti-parallel
Strand 4	L	401	404	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	94	97	first strand
Strand 2	Q	82	87	anti-parallel
Strand 3	R	81	90	anti-parallel
Strand 4	R	433	440	anti-parallel
Strand 5	R	424	429	anti-parallel
Strand 6	R	413	418	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	99	101	first strand
Strand 2	R	132	140	parallel
Strand 3	R	120	126	anti-parallel
Strand 4	R	111	117	anti-parallel
Strand 5	R	96	101	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	115	first strand
Strand 2	Q	673	681	parallel
Strand 3	Q	643	647	anti-parallel
Strand 4	Q	120	121	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	115	first strand
Strand 2	Q	673	681	parallel
Strand 3	Q	666	668	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	614	618	first strand
Strand 2	Q	624	628	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	637	640	first strand
Strand 2	Q	705	712	anti-parallel
Strand 3	Q	695	702	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	688	689	first strand
Strand 2	Q	723	724	parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	147	154	first strand
Strand 2	R	161	167	anti-parallel
Strand 3	R	172	176	anti-parallel
Strand 4	R	181	186	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	193	198	first strand
Strand 2	R	205	210	anti-parallel
Strand 3	R	215	219	anti-parallel
Strand 4	R	224	229	anti-parallel
Strand 5	R	292	294	parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	239	244	first strand
Strand 2	R	250	255	anti-parallel
Strand 3	R	260	264	anti-parallel
Strand 4	R	299	301	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	311	315	first strand
Strand 2	R	318	322	anti-parallel
Strand 3	R	327	333	anti-parallel
Strand 4	R	350	357	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	368	370	first strand
Strand 2	R	376	380	anti-parallel
Strand 3	R	386	390	anti-parallel
Strand 4	R	402	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HYN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HYN