Analysis of interatomic Contacts of Structural Units in PDB entry:
5HYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HYW entry

There are 4 chains in PDB entry 5HYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 18ASP 720
B
 ASP 87GLU 160
C
 LEU 20ASP 719
D
 MET 91GLU 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 5HYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 31Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
45 56Right-handed alpha
Helix 4
AA4
A
67 72Right-handed alpha
Helix 5
AA5
A
129 143Right-handed alpha
Helix 6
AA6
A
156 167Right-handed alpha
Helix 7
AA7
A
191 198Right-handed alpha
Helix 8
AA8
A
212 222Right-handed alpha
Helix 9
AA9
A
223 228Right-handed alpha
Helix 10
AB1
A
236 240Right-handed 310
Helix 11
AB2
A
245 256Right-handed alpha
Helix 12
AB3
A
277 286Right-handed alpha
Helix 13
AB4
A
314 325Right-handed alpha
Helix 14
AB5
A
342 353Right-handed alpha
Helix 15
AB6
A
393 400Right-handed alpha
Helix 16
AB7
A
535 539Right-handed 310
Helix 17
AB8
A
573 578Right-handed 310
Helix 18
AB9
A
607 616Right-handed alpha
Helix 19
AC1
A
617 621Right-handed 310
Helix 20
AC2
A
643 652Right-handed alpha
Helix 21
AC3
A
666 676Right-handed 310
Helix 22
AC4
A
705 716Right-handed alpha
Helix 23
AC5
B
95 108Right-handed alpha
Helix 24
AC6
B
110 126Right-handed alpha
Helix 25
AC7
B
129 137Right-handed alpha
Helix 26
AC8
B
144 156Right-handed alpha
Helix 27
AC9
C
21 30Right-handed alpha
Helix 28
AD1
C
34 45Right-handed alpha
Helix 29
AD2
C
45 56Right-handed alpha
Helix 30
AD3
C
67 72Right-handed alpha
Helix 31
AD4
C
129 143Right-handed alpha
Helix 32
AD5
C
156 167Right-handed alpha
Helix 33
AD6
C
191 198Right-handed alpha
Helix 34
AD7
C
212 222Right-handed alpha
Helix 35
AD8
C
223 228Right-handed alpha
Helix 36
AD9
C
245 256Right-handed alpha
Helix 37
AE1
C
277 286Right-handed alpha
Helix 38
AE2
C
314 325Right-handed alpha
Helix 39
AE3
C
342 353Right-handed alpha
Helix 40
AE4
C
393 400Right-handed alpha
Helix 41
AE5
C
536 541Right-handed alpha
Helix 42
AE6
C
573 578Right-handed 310
Helix 43
AE7
C
607 616Right-handed alpha
Helix 44
AE8
C
617 621Right-handed 310
Helix 45
AE9
C
643 651Right-handed alpha
Helix 46
AF1
C
666 676Right-handed 310
Helix 47
AF2
C
705 716Right-handed alpha
Helix 48
AF3
D
95 109Right-handed alpha
Helix 49
AF4
D
110 126Right-handed alpha
Helix 50
AF5
D
129 137Right-handed alpha
Helix 51
AF6
D
144 156Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5HYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
84 87parallel
Strand 3
A
148 152parallel
Strand 4
A
172 177parallel
Strand 5
A
203 209parallel
Strand 6
A
232 234parallel
Strand 7
A
261 265parallel
Strand 8
A
293 297parallel
Strand 9
A
330 334parallel
Strand 10
A
358 361parallel
Strand 11
A
383 385parallel
Strand 12
A
409 411parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
456 458parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 529first strand
Strand 2
A
551 557parallel
Strand 3
A
585 592parallel
Strand 4
A
626 630parallel
Strand 5
A
658 661parallel
Strand 6
A
681 683parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
84 86parallel
Strand 3
C
148 152parallel
Strand 4
C
172 177parallel
Strand 5
C
203 209parallel
Strand 6
C
232 234parallel
Strand 7
C
261 265parallel
Strand 8
C
293 297parallel
Strand 9
C
330 334parallel
Strand 10
C
358 361parallel
Strand 11
C
383 386parallel
Strand 12
C
409 411parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
433 436first strand
Strand 2
C
456 459parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
524 529first strand
Strand 2
C
551 556parallel
Strand 3
C
585 589parallel
Strand 4
C
626 630parallel
Strand 5
C
658 661parallel
Strand 6
C
681 684parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il