Analysis of interatomic Contacts of Structural Units in PDB entry:
5HZL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HZL entry

There is 1 chain in PDB entry 5HZL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 12THR 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5HZL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
20 24Right-handed alpha
Helix 2
AA2
B
26 37Right-handed alpha
Helix 3
AA3
B
47 52Right-handed alpha
Helix 4
AA4
B
65 71Right-handed alpha
Helix 5
AA5
B
72 75Right-handed 310
Helix 6
AA6
B
186 192Right-handed alpha
Helix 7
AA7
B
222 228Right-handed alpha
Helix 8
AA8
B
229 231Right-handed 310
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There are 7 sheets in PDB entry 5HZL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
45 46anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
82 84parallel
Strand 3
B
105 107parallel
Strand 4
B
126 128parallel
Strand 5
B
149 151parallel
Strand 6
B
174 176parallel
Strand 7
B
197 199parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
113 115parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
181 182parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 206first strand
Strand 2
B
290 298parallel
Strand 3
B
210 212parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 206first strand
Strand 2
B
290 298parallel
Strand 3
B
273 281anti-parallel
Strand 4
B
240 244anti-parallel
Strand 5
B
247 250anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 221first strand
Strand 2
B
262 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il