Analysis of interatomic Contacts of Structural Units in PDB entry:
5I08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I08 entry

There are 3 chains in PDB entry 5I08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 15	SER 1147
B	ILE 15	SER 1147
C	ILE 15	SER 1147

There are 75 helices in PDB entry 5I08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	91	Right-handed 310
Helix 2	AA2	A	248	252	Right-handed 310
Helix 3	AA3	A	281	284	Right-handed 310
Helix 4	AA4	A	285	295	Right-handed alpha
Helix 5	AA5	A	328	334	Right-handed alpha
Helix 6	AA6	A	341	344	Right-handed 310
Helix 7	AA7	A	355	362	Right-handed alpha
Helix 8	AA8	A	374	381	Right-handed alpha
Helix 9	AA9	A	397	402	Right-handed 310
Helix 10	AB1	A	696	703	Right-handed alpha
Helix 11	AB2	A	823	833	Right-handed alpha
Helix 12	AB3	A	835	863	Right-handed alpha
Helix 13	AB4	A	903	907	Right-handed alpha
Helix 14	AB5	A	908	910	Right-handed 310
Helix 15	AB6	A	914	924	Right-handed alpha
Helix 16	AB7	A	934	941	Right-handed alpha
Helix 17	AB8	A	951	968	Right-handed alpha
Helix 18	AB9	A	978	988	Right-handed alpha
Helix 19	AC1	A	995	1000	Right-handed alpha
Helix 20	AC2	A	1002	1017	Right-handed alpha
Helix 21	AC3	A	1018	1021	Right-handed 310
Helix 22	AC4	A	1024	1046	Right-handed alpha
Helix 23	AC5	A	1047	1049	Right-handed 310
Helix 24	AC6	A	1058	1065	Right-handed alpha
Helix 25	AC7	A	1067	1111	Right-handed alpha
Helix 26	AC8	B	88	91	Right-handed 310
Helix 27	AC9	B	248	252	Right-handed 310
Helix 28	AD1	B	281	284	Right-handed 310
Helix 29	AD2	B	285	295	Right-handed alpha
Helix 30	AD3	B	328	334	Right-handed alpha
Helix 31	AD4	B	341	344	Right-handed 310
Helix 32	AD5	B	355	362	Right-handed alpha
Helix 33	AD6	B	374	381	Right-handed alpha
Helix 34	AD7	B	397	402	Right-handed 310
Helix 35	AD8	B	696	703	Right-handed alpha
Helix 36	AD9	B	823	833	Right-handed alpha
Helix 37	AE1	B	835	863	Right-handed alpha
Helix 38	AE2	B	903	907	Right-handed alpha
Helix 39	AE3	B	908	910	Right-handed 310
Helix 40	AE4	B	914	924	Right-handed alpha
Helix 41	AE5	B	934	941	Right-handed alpha
Helix 42	AE6	B	951	968	Right-handed alpha
Helix 43	AE7	B	978	988	Right-handed alpha
Helix 44	AE8	B	995	1000	Right-handed alpha
Helix 45	AE9	B	1002	1017	Right-handed alpha
Helix 46	AF1	B	1018	1021	Right-handed 310
Helix 47	AF2	B	1024	1046	Right-handed alpha
Helix 48	AF3	B	1047	1049	Right-handed 310
Helix 49	AF4	B	1058	1065	Right-handed alpha
Helix 50	AF5	B	1067	1111	Right-handed alpha
Helix 51	AF6	C	88	91	Right-handed 310
Helix 52	AF7	C	248	252	Right-handed 310
Helix 53	AF8	C	281	284	Right-handed 310
Helix 54	AF9	C	285	295	Right-handed alpha
Helix 55	AG1	C	328	334	Right-handed alpha
Helix 56	AG2	C	341	344	Right-handed 310
Helix 57	AG3	C	355	362	Right-handed alpha
Helix 58	AG4	C	374	381	Right-handed alpha
Helix 59	AG5	C	397	402	Right-handed 310
Helix 60	AG6	C	696	703	Right-handed alpha
Helix 61	AG7	C	823	833	Right-handed alpha
Helix 62	AG8	C	835	863	Right-handed alpha
Helix 63	AG9	C	903	907	Right-handed alpha
Helix 64	AH1	C	908	910	Right-handed 310
Helix 65	AH2	C	914	924	Right-handed alpha
Helix 66	AH3	C	934	941	Right-handed alpha
Helix 67	AH4	C	951	968	Right-handed alpha
Helix 68	AH5	C	978	988	Right-handed alpha
Helix 69	AH6	C	995	1000	Right-handed alpha
Helix 70	AH7	C	1002	1017	Right-handed alpha
Helix 71	AH8	C	1018	1021	Right-handed 310
Helix 72	AH9	C	1024	1046	Right-handed alpha
Helix 73	AI1	C	1047	1049	Right-handed 310
Helix 74	AI2	C	1058	1065	Right-handed alpha
Helix 75	AI3	C	1067	1111	Right-handed alpha

There are 42 sheets in PDB entry 5I08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	85	86	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	39	first strand
Strand 2	A	73	76	anti-parallel
Strand 3	A	256	260	anti-parallel
Strand 4	A	101	107	anti-parallel
Strand 5	A	197	205	anti-parallel
Strand 6	A	208	214	anti-parallel
Strand 7	A	221	227	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	C	647	650	parallel
Strand 3	C	653	659	anti-parallel
Strand 4	C	666	670	anti-parallel
Strand 5	C	627	635	anti-parallel
Strand 6	C	620	624	anti-parallel
Strand 7	C	317	319	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	67	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	276	280	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	234	237	anti-parallel
Strand 3	A	124	127	anti-parallel
Strand 4	A	136	142	anti-parallel
Strand 5	A	145	151	anti-parallel
Strand 6	A	183	190	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	117	118	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	306	first strand
Strand 2	A	677	680	anti-parallel
Strand 3	A	689	693	anti-parallel
Strand 4	A	718	720	anti-parallel
Strand 5	A	713	714	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	620	624	parallel
Strand 3	A	627	635	anti-parallel
Strand 4	A	666	670	anti-parallel
Strand 5	A	653	659	anti-parallel
Strand 6	A	647	650	anti-parallel
Strand 7	B	54	55	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	435	437	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	386	392	anti-parallel
Strand 3	A	585	594	anti-parallel
Strand 4	A	422	430	anti-parallel
Strand 5	A	364	371	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	603	604	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	458	first strand
Strand 2	A	577	579	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	745	first strand
Strand 2	A	763	766	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	801	first strand
Strand 2	A	1140	1147	anti-parallel
Strand 3	A	1131	1137	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	812	first strand
Strand 2	A	943	946	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	85	86	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	73	76	anti-parallel
Strand 3	B	256	260	anti-parallel
Strand 4	B	101	107	anti-parallel
Strand 5	B	197	205	anti-parallel
Strand 6	B	208	214	anti-parallel
Strand 7	B	221	227	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	67	first strand
Strand 2	B	262	270	anti-parallel
Strand 3	B	276	280	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	234	237	anti-parallel
Strand 3	B	124	127	anti-parallel
Strand 4	B	136	142	anti-parallel
Strand 5	B	145	151	anti-parallel
Strand 6	B	183	190	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	117	118	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	306	first strand
Strand 2	B	677	680	anti-parallel
Strand 3	B	689	693	anti-parallel
Strand 4	B	718	720	anti-parallel
Strand 5	B	713	714	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	620	624	parallel
Strand 3	B	627	635	anti-parallel
Strand 4	B	666	670	anti-parallel
Strand 5	B	653	659	anti-parallel
Strand 6	B	647	650	anti-parallel
Strand 7	C	54	55	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	435	437	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	386	392	anti-parallel
Strand 3	B	585	594	anti-parallel
Strand 4	B	422	430	anti-parallel
Strand 5	B	364	371	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	603	604	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	458	first strand
Strand 2	B	577	579	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	745	first strand
Strand 2	B	763	766	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	801	first strand
Strand 2	B	1140	1147	anti-parallel
Strand 3	B	1131	1137	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	812	first strand
Strand 2	B	943	946	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	85	86	parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	73	76	anti-parallel
Strand 3	C	256	260	anti-parallel
Strand 4	C	101	107	anti-parallel
Strand 5	C	197	205	anti-parallel
Strand 6	C	208	214	anti-parallel
Strand 7	C	221	227	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	67	first strand
Strand 2	C	262	270	anti-parallel
Strand 3	C	276	280	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	234	237	anti-parallel
Strand 3	C	124	127	anti-parallel
Strand 4	C	136	142	anti-parallel
Strand 5	C	145	151	anti-parallel
Strand 6	C	183	190	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	C	117	118	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	306	first strand
Strand 2	C	677	680	anti-parallel
Strand 3	C	689	693	anti-parallel
Strand 4	C	718	720	anti-parallel
Strand 5	C	713	714	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	435	437	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	386	392	anti-parallel
Strand 3	C	585	594	anti-parallel
Strand 4	C	422	430	anti-parallel
Strand 5	C	364	371	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	603	604	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	458	first strand
Strand 2	C	577	579	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	742	745	first strand
Strand 2	C	763	766	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	797	801	first strand
Strand 2	C	1140	1147	anti-parallel
Strand 3	C	1131	1137	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	809	812	first strand
Strand 2	C	943	946	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I08

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I08