Analysis of interatomic Contacts of Structural Units in PDB entry:
5I1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I1M entry

There is 1 chain in PDB entry 5I1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
V
 THR 383SER 840
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5I1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
V
387 397Right-handed alpha
Helix 2
AA2
V
403 408Right-handed alpha
Helix 3
AA3
V
408 420Right-handed alpha
Helix 4
AA4
V
429 445Right-handed alpha
Helix 5
AA5
V
452 457Right-handed alpha
Helix 6
AA6
V
460 479Right-handed alpha
Helix 7
AA7
V
479 484Right-handed alpha
Helix 8
AA8
V
529 558Right-handed alpha
Helix 9
AA9
V
571 594Right-handed alpha
Helix 10
AB1
V
607 612Right-handed alpha
Helix 11
AB2
V
631 650Right-handed alpha
Helix 12
AB3
V
650 658Right-handed alpha
Helix 13
AB4
V
660 666Right-handed alpha
Helix 14
AB5
V
668 672Right-handed 310
Helix 15
AB6
V
673 687Right-handed alpha
Helix 16
AB7
V
692 697Right-handed alpha
Helix 17
AB8
V
709 759Right-handed alpha
Helix 18
AB9
V
764 810Right-handed alpha
Helix 19
AC1
V
827 831Right-handed 310
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There are no sheets in PDB entry 5I1M
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il