Analysis of interatomic Contacts of Structural Units in PDB entry:
5I2H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I2H entry

There are 2 chains in PDB entry 5I2H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MSE 1VAL 361
B
MSE 1VAL 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5I2H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
14 22Right-handed alpha
Helix 2
AA2
A
22 36Right-handed alpha
Helix 3
AA3
A
38 46Right-handed alpha
Helix 4
AA4
A
49 58Right-handed alpha
Helix 5
AA5
A
60 74Right-handed alpha
Helix 6
AA6
A
88 95Right-handed alpha
Helix 7
AA7
A
103 108Right-handed alpha
Helix 8
AA8
A
109 111Right-handed 310
Helix 9
AA9
A
113 126Right-handed alpha
Helix 10
AB1
A
150 177Right-handed alpha
Helix 11
AB2
A
205 215Right-handed alpha
Helix 12
AB3
A
225 239Right-handed alpha
Helix 13
AB4
A
241 243Right-handed 310
Helix 14
AB5
A
268 272Right-handed 310
Helix 15
AB6
A
273 287Right-handed alpha
Helix 16
AB7
A
308 322Right-handed alpha
Helix 17
AB8
A
328 339Right-handed alpha
Helix 18
AB9
B
14 22Right-handed alpha
Helix 19
AC1
B
22 36Right-handed alpha
Helix 20
AC2
B
38 46Right-handed alpha
Helix 21
AC3
B
50 58Right-handed alpha
Helix 22
AC4
B
60 74Right-handed alpha
Helix 23
AC5
B
88 95Right-handed alpha
Helix 24
AC6
B
103 108Right-handed alpha
Helix 25
AC7
B
109 111Right-handed 310
Helix 26
AC8
B
113 126Right-handed alpha
Helix 27
AC9
B
155 177Right-handed alpha
Helix 28
AD1
B
205 215Right-handed alpha
Helix 29
AD2
B
225 239Right-handed alpha
Helix 30
AD3
B
241 243Right-handed 310
Helix 31
AD4
B
268 272Right-handed 310
Helix 32
AD5
B
273 287Right-handed alpha
Helix 33
AD6
B
308 322Right-handed alpha
Helix 34
AD7
B
328 339Right-handed alpha
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There are 4 sheets in PDB entry 5I2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 79first strand
Strand 2
A
85 87anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
245 249first strand
Strand 2
A
219 224parallel
Strand 3
A
196 200parallel
Strand 4
A
262 266parallel
Strand 5
A
293 298parallel
Strand 6
A
354 359anti-parallel
Strand 7
A
342 348anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 49first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
77 80anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
245 249first strand
Strand 2
B
219 224parallel
Strand 3
B
196 200parallel
Strand 4
B
262 266parallel
Strand 5
B
293 298parallel
Strand 6
B
354 360anti-parallel
Strand 7
B
341 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il