Analysis of interatomic Contacts of Structural Units in PDB entry:
5I34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I34 entry

There are 2 chains in PDB entry 5I34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 430
B
 SER 4SER 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5I34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 30Right-handed alpha
Helix 2
AA2
A
66 71Right-handed 310
Helix 3
AA3
A
85 99Right-handed alpha
Helix 4
AA4
A
117 132Right-handed alpha
Helix 5
AA5
A
133 135Right-handed 310
Helix 6
AA6
A
142 152Right-handed alpha
Helix 7
AA7
A
157 163Right-handed 310
Helix 8
AA8
A
165 182Right-handed alpha
Helix 9
AA9
A
187 203Right-handed alpha
Helix 10
AB1
A
208 219Right-handed alpha
Helix 11
AB2
A
230 234Right-handed 310
Helix 12
AB3
A
249 258Right-handed alpha
Helix 13
AB4
A
260 262Right-handed 310
Helix 14
AB5
A
289 299Right-handed alpha
Helix 15
AB6
A
317 328Right-handed alpha
Helix 16
AB7
A
336 341Right-handed 310
Helix 17
AB8
A
365 371Right-handed alpha
Helix 18
AB9
A
391 395Right-handed 310
Helix 19
AC1
A
396 411Right-handed alpha
Helix 20
AC2
B
20 29Right-handed alpha
Helix 21
AC3
B
30 32Right-handed 310
Helix 22
AC4
B
85 99Right-handed alpha
Helix 23
AC5
B
103 105Right-handed 310
Helix 24
AC6
B
117 132Right-handed alpha
Helix 25
AC7
B
133 135Right-handed 310
Helix 26
AC8
B
142 152Right-handed alpha
Helix 27
AC9
B
157 163Right-handed 310
Helix 28
AD1
B
165 182Right-handed alpha
Helix 29
AD2
B
187 203Right-handed alpha
Helix 30
AD3
B
208 219Right-handed alpha
Helix 31
AD4
B
230 234Right-handed 310
Helix 32
AD5
B
249 258Right-handed alpha
Helix 33
AD6
B
260 262Right-handed 310
Helix 34
AD7
B
289 299Right-handed alpha
Helix 35
AD8
B
317 328Right-handed alpha
Helix 36
AD9
B
336 341Right-handed 310
Helix 37
AE1
B
365 371Right-handed alpha
Helix 38
AE2
B
391 395Right-handed 310
Helix 39
AE3
B
396 411Right-handed alpha
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There are 11 sheets in PDB entry 5I34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
107 110parallel
Strand 3
A
75 78parallel
Strand 4
A
34 37parallel
Strand 5
A
222 226parallel
Strand 6
A
7 13parallel
Strand 7
A
264 272parallel
Strand 8
A
331 335parallel
Strand 9
A
414 418parallel
Strand 10
A
426 428anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
57 62anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
114 115parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
311 313anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
345 354parallel
Strand 3
A
357 358anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
345 354parallel
Strand 3
A
373 380anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
107 110parallel
Strand 3
B
75 78parallel
Strand 4
B
34 37parallel
Strand 5
B
222 226parallel
Strand 6
B
7 13parallel
Strand 7
B
264 272parallel
Strand 8
B
331 335parallel
Strand 9
B
414 418parallel
Strand 10
B
426 428anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
114 115parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
311 313anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
345 354parallel
Strand 3
B
357 358anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
345 354parallel
Strand 3
B
373 380anti-parallel
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