Analysis of interatomic Contacts of Structural Units in PDB entry:
5I39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I39 entry

There is 1 chain in PDB entry 5I39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 31PHE 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5I39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 76Right-handed alpha
Helix 2
AA2
A
91 95Right-handed 310
Helix 3
AA3
A
106 121Right-handed alpha
Helix 4
AA4
A
122 128Right-handed alpha
Helix 5
AA5
A
144 161Right-handed alpha
Helix 6
AA6
A
174 182Right-handed alpha
Helix 7
AA7
A
205 217Right-handed alpha
Helix 8
AA8
A
256 258Right-handed 310
Helix 9
AA9
A
259 266Right-handed alpha
Helix 10
AB1
A
380 395Right-handed alpha
Helix 11
AB2
A
396 399Right-handed 310
Helix 12
AB3
A
438 456Right-handed alpha
Helix 13
AB4
A
463 467Right-handed 310
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There are 4 sheets in PDB entry 5I39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
80 83parallel
Strand 3
A
57 60parallel
Strand 4
A
252 254parallel
Strand 5
A
430 434parallel
Strand 6
A
420 423anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
199 200anti-parallel
Strand 3
A
134 135anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
192 195anti-parallel
Strand 3
A
138 140anti-parallel
Strand 4
A
293 296parallel
Strand 5
A
300 304anti-parallel
Strand 6
A
310 312anti-parallel
Strand 7
A
274 283anti-parallel
Strand 8
A
403 413anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 233first strand
Strand 2
A
236 242anti-parallel
Strand 3
A
245 248anti-parallel
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