Analysis of interatomic Contacts of Structural Units in PDB entry:
5I3T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I3T entry

There are 5 chains in PDB entry 5I3T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	PRO 394
B	LEU 33	PRO 394
C	LEU 33	PRO 394
D	LEU 33	PRO 394
E	LEU 33	ALA 395

There are102 helices in PDB entry 5I3T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	51	Right-handed alpha
Helix 2	AA2	A	54	66	Right-handed alpha
Helix 3	AA3	A	80	87	Right-handed alpha
Helix 4	AA4	A	89	91	Right-handed 310
Helix 5	AA5	A	92	111	Right-handed alpha
Helix 6	AA6	A	114	130	Right-handed alpha
Helix 7	AA7	A	131	136	Right-handed alpha
Helix 8	AA8	A	136	141	Right-handed alpha
Helix 9	AA9	A	152	171	Right-handed alpha
Helix 10	AB1	A	175	193	Right-handed alpha
Helix 11	AB2	A	206	225	Right-handed alpha
Helix 12	AB3	A	227	230	Right-handed 310
Helix 13	AB4	A	231	240	Right-handed alpha
Helix 14	AB5	A	267	279	Right-handed alpha
Helix 15	AB6	A	282	297	Right-handed alpha
Helix 16	AB7	A	324	336	Right-handed alpha
Helix 17	AB8	A	338	350	Right-handed alpha
Helix 18	AB9	A	351	353	Right-handed 310
Helix 19	AC1	A	371	382	Right-handed alpha
Helix 20	AC2	A	384	390	Right-handed alpha
Helix 21	AC3	B	40	46	Right-handed alpha
Helix 22	AC4	B	46	51	Right-handed alpha
Helix 23	AC5	B	54	66	Right-handed alpha
Helix 24	AC6	B	80	87	Right-handed alpha
Helix 25	AC7	B	89	91	Right-handed 310
Helix 26	AC8	B	92	111	Right-handed alpha
Helix 27	AC9	B	114	130	Right-handed alpha
Helix 28	AD1	B	131	136	Right-handed alpha
Helix 29	AD2	B	136	141	Right-handed alpha
Helix 30	AD3	B	152	171	Right-handed alpha
Helix 31	AD4	B	175	193	Right-handed alpha
Helix 32	AD5	B	206	225	Right-handed alpha
Helix 33	AD6	B	227	230	Right-handed 310
Helix 34	AD7	B	231	243	Right-handed alpha
Helix 35	AD8	B	267	279	Right-handed alpha
Helix 36	AD9	B	282	297	Right-handed alpha
Helix 37	AE1	B	324	336	Right-handed alpha
Helix 38	AE2	B	338	350	Right-handed alpha
Helix 39	AE3	B	351	353	Right-handed 310
Helix 40	AE4	B	371	382	Right-handed alpha
Helix 41	AE5	B	384	390	Right-handed alpha
Helix 42	AE6	C	40	46	Right-handed alpha
Helix 43	AE7	C	46	51	Right-handed alpha
Helix 44	AE8	C	54	66	Right-handed alpha
Helix 45	AE9	C	80	86	Right-handed alpha
Helix 46	AF1	C	89	91	Right-handed 310
Helix 47	AF2	C	92	111	Right-handed alpha
Helix 48	AF3	C	114	130	Right-handed alpha
Helix 49	AF4	C	131	136	Right-handed alpha
Helix 50	AF5	C	136	141	Right-handed alpha
Helix 51	AF6	C	152	171	Right-handed alpha
Helix 52	AF7	C	175	193	Right-handed alpha
Helix 53	AF8	C	206	225	Right-handed alpha
Helix 54	AF9	C	227	230	Right-handed 310
Helix 55	AG1	C	231	242	Right-handed alpha
Helix 56	AG2	C	267	279	Right-handed alpha
Helix 57	AG3	C	282	297	Right-handed alpha
Helix 58	AG4	C	324	336	Right-handed alpha
Helix 59	AG5	C	338	354	Right-handed alpha
Helix 60	AG6	C	371	382	Right-handed alpha
Helix 61	AG7	C	384	390	Right-handed alpha
Helix 62	AG8	D	40	46	Right-handed alpha
Helix 63	AG9	D	46	51	Right-handed alpha
Helix 64	AH1	D	54	66	Right-handed alpha
Helix 65	AH2	D	80	86	Right-handed alpha
Helix 66	AH3	D	89	91	Right-handed 310
Helix 67	AH4	D	92	111	Right-handed alpha
Helix 68	AH5	D	114	130	Right-handed alpha
Helix 69	AH6	D	131	136	Right-handed alpha
Helix 70	AH7	D	136	141	Right-handed alpha
Helix 71	AH8	D	152	171	Right-handed alpha
Helix 72	AH9	D	175	193	Right-handed alpha
Helix 73	AI1	D	206	225	Right-handed alpha
Helix 74	AI2	D	227	230	Right-handed 310
Helix 75	AI3	D	231	240	Right-handed alpha
Helix 76	AI4	D	267	279	Right-handed alpha
Helix 77	AI5	D	282	297	Right-handed alpha
Helix 78	AI6	D	324	336	Right-handed alpha
Helix 79	AI7	D	338	350	Right-handed alpha
Helix 80	AI8	D	351	353	Right-handed 310
Helix 81	AI9	D	371	382	Right-handed alpha
Helix 82	AJ1	D	384	390	Right-handed alpha
Helix 83	AJ2	E	40	46	Right-handed alpha
Helix 84	AJ3	E	54	66	Right-handed alpha
Helix 85	AJ4	E	80	86	Right-handed alpha
Helix 86	AJ5	E	89	91	Right-handed 310
Helix 87	AJ6	E	92	111	Right-handed alpha
Helix 88	AJ7	E	114	130	Right-handed alpha
Helix 89	AJ8	E	131	136	Right-handed alpha
Helix 90	AJ9	E	136	141	Right-handed alpha
Helix 91	AK1	E	152	171	Right-handed alpha
Helix 92	AK2	E	175	193	Right-handed alpha
Helix 93	AK3	E	206	225	Right-handed alpha
Helix 94	AK4	E	227	230	Right-handed 310
Helix 95	AK5	E	231	242	Right-handed alpha
Helix 96	AK6	E	267	279	Right-handed alpha
Helix 97	AK7	E	282	297	Right-handed alpha
Helix 98	AK8	E	324	336	Right-handed alpha
Helix 99	AK9	E	338	350	Right-handed alpha
Helix 100	AL1	E	351	353	Right-handed 310
Helix 101	AL2	E	371	382	Right-handed alpha
Helix 102	AL3	E	384	390	Right-handed alpha

There are 17 sheets in PDB entry 5I3T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	250	251	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	261	262	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	306	309	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	358	first strand
Strand 2	A	361	364	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	250	251	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	261	262	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	306	309	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	358	first strand
Strand 2	B	361	364	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	250	251	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	301	first strand
Strand 2	C	306	309	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	358	first strand
Strand 2	C	361	364	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	245	first strand
Strand 2	D	250	251	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand
Strand 2	D	306	309	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	358	first strand
Strand 2	D	361	364	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	245	first strand
Strand 2	E	250	251	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	301	first strand
Strand 2	E	306	309	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	358	first strand
Strand 2	E	361	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I3T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I3T