Analysis of interatomic Contacts of Structural Units in PDB entry:
5I48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I48 entry

There are 4 chains in PDB entry 5I48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	TYR 327
B	LEU 4	TYR 327
C	LEU 4	TYR 327
D	LEU 4	TYR 327

There are 48 helices in PDB entry 5I48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	43	Right-handed alpha
Helix 2	AA2	A	44	49	Right-handed 310
Helix 3	AA3	A	61	65	Right-handed 310
Helix 4	AA4	A	66	82	Right-handed alpha
Helix 5	AA5	A	97	109	Right-handed alpha
Helix 6	AA6	A	130	144	Right-handed alpha
Helix 7	AA7	A	145	148	Right-handed 310
Helix 8	AA8	A	203	207	Right-handed 310
Helix 9	AA9	A	231	240	Right-handed alpha
Helix 10	AB1	A	256	269	Right-handed alpha
Helix 11	AB2	A	299	312	Right-handed alpha
Helix 12	AB3	A	316	327	Right-handed alpha
Helix 13	AB4	B	35	43	Right-handed alpha
Helix 14	AB5	B	44	49	Right-handed 310
Helix 15	AB6	B	61	65	Right-handed 310
Helix 16	AB7	B	66	82	Right-handed alpha
Helix 17	AB8	B	97	109	Right-handed alpha
Helix 18	AB9	B	130	144	Right-handed alpha
Helix 19	AC1	B	145	148	Right-handed 310
Helix 20	AC2	B	203	207	Right-handed 310
Helix 21	AC3	B	231	240	Right-handed alpha
Helix 22	AC4	B	256	269	Right-handed alpha
Helix 23	AC5	B	299	311	Right-handed alpha
Helix 24	AC6	B	316	327	Right-handed alpha
Helix 25	AC7	C	35	43	Right-handed alpha
Helix 26	AC8	C	44	49	Right-handed 310
Helix 27	AC9	C	61	65	Right-handed 310
Helix 28	AD1	C	66	82	Right-handed alpha
Helix 29	AD2	C	97	109	Right-handed alpha
Helix 30	AD3	C	130	144	Right-handed alpha
Helix 31	AD4	C	145	148	Right-handed 310
Helix 32	AD5	C	203	207	Right-handed 310
Helix 33	AD6	C	231	240	Right-handed alpha
Helix 34	AD7	C	256	269	Right-handed alpha
Helix 35	AD8	C	299	312	Right-handed alpha
Helix 36	AD9	C	316	327	Right-handed alpha
Helix 37	AE1	D	35	43	Right-handed alpha
Helix 38	AE2	D	44	49	Right-handed 310
Helix 39	AE3	D	61	65	Right-handed 310
Helix 40	AE4	D	66	82	Right-handed alpha
Helix 41	AE5	D	97	109	Right-handed alpha
Helix 42	AE6	D	130	144	Right-handed alpha
Helix 43	AE7	D	145	148	Right-handed 310
Helix 44	AE8	D	203	207	Right-handed 310
Helix 45	AE9	D	231	240	Right-handed alpha
Helix 46	AF1	D	256	269	Right-handed alpha
Helix 47	AF2	D	299	312	Right-handed alpha
Helix 48	AF3	D	316	327	Right-handed alpha

There are 18 sheets in PDB entry 5I48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	60	first strand
Strand 2	A	6	13	parallel
Strand 3	A	88	92	parallel
Strand 4	A	115	118	parallel
Strand 5	A	153	156	parallel
Strand 6	A	159	162	anti-parallel
Strand 7	A	186	189	anti-parallel
Strand 8	A	192	195	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	A	30	31	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	177	178	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	D	197	199	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	244	249	parallel
Strand 3	A	272	277	parallel
Strand 4	A	293	294	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	60	first strand
Strand 2	B	6	13	parallel
Strand 3	B	88	92	parallel
Strand 4	B	115	118	parallel
Strand 5	B	153	156	parallel
Strand 6	B	159	162	anti-parallel
Strand 7	B	186	189	anti-parallel
Strand 8	B	192	195	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	30	31	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	177	178	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	C	197	199	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	224	first strand
Strand 2	B	244	249	parallel
Strand 3	B	272	277	parallel
Strand 4	B	293	294	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	60	first strand
Strand 2	C	6	13	parallel
Strand 3	C	88	92	parallel
Strand 4	C	115	118	parallel
Strand 5	C	153	156	parallel
Strand 6	C	159	162	anti-parallel
Strand 7	C	186	189	anti-parallel
Strand 8	C	192	195	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	30	31	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	177	178	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	224	first strand
Strand 2	C	244	249	parallel
Strand 3	C	272	277	parallel
Strand 4	C	293	294	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	60	first strand
Strand 2	D	6	13	parallel
Strand 3	D	88	92	parallel
Strand 4	D	115	118	parallel
Strand 5	D	153	156	parallel
Strand 6	D	159	162	anti-parallel
Strand 7	D	186	189	anti-parallel
Strand 8	D	192	195	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	30	31	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	177	178	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	224	first strand
Strand 2	D	244	249	parallel
Strand 3	D	272	277	parallel
Strand 4	D	293	294	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I48

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I48