Analysis of interatomic Contacts of Structural Units in PDB entry:
5I5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I5I entry

There are 2 chains in PDB entry 5I5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 58	ALA 628
B	VAL 57	ALA 628

There are 19 helices in PDB entry 5I5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	75	Right-handed 310
Helix 2	AA2	A	106	114	Right-handed alpha
Helix 3	AA3	A	115	117	Right-handed 310
Helix 4	AA4	A	276	286	Right-handed alpha
Helix 5	AA5	A	346	352	Right-handed alpha
Helix 6	AA6	A	356	359	Right-handed 310
Helix 7	AA7	A	397	405	Right-handed alpha
Helix 8	AA8	A	493	495	Right-handed 310
Helix 9	AA9	A	505	507	Right-handed 310
Helix 10	AB1	A	508	518	Right-handed alpha
Helix 11	AB2	B	73	76	Right-handed 310
Helix 12	AB3	B	106	114	Right-handed alpha
Helix 13	AB4	B	115	117	Right-handed 310
Helix 14	AB5	B	276	285	Right-handed alpha
Helix 15	AB6	B	346	353	Right-handed alpha
Helix 16	AB7	B	356	359	Right-handed 310
Helix 17	AB8	B	397	405	Right-handed alpha
Helix 18	AB9	B	493	495	Right-handed 310
Helix 19	AC1	B	508	518	Right-handed alpha

There are 20 sheets in PDB entry 5I5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	77	83	anti-parallel
Strand 3	A	66	71	anti-parallel
Strand 4	A	487	491	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	135	145	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	160	166	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	178	first strand
Strand 2	A	186	192	anti-parallel
Strand 3	A	213	219	anti-parallel
Strand 4	A	224	231	anti-parallel
Strand 5	A	298	300	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	240	first strand
Strand 2	A	246	253	anti-parallel
Strand 3	A	269	275	anti-parallel
Strand 4	A	308	313	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	322	first strand
Strand 2	A	328	332	anti-parallel
Strand 3	A	339	343	anti-parallel
Strand 4	A	361	363	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	381	386	anti-parallel
Strand 3	A	391	396	anti-parallel
Strand 4	A	412	417	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	427	first strand
Strand 2	A	439	444	anti-parallel
Strand 3	A	460	466	anti-parallel
Strand 4	A	473	480	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	531	first strand
Strand 2	A	534	542	anti-parallel
Strand 3	A	545	546	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	531	first strand
Strand 2	A	534	542	anti-parallel
Strand 3	A	558	565	parallel
Strand 4	A	592	598	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	554	first strand
Strand 2	A	621	627	parallel
Strand 3	A	603	608	anti-parallel
Strand 4	A	574	578	anti-parallel
Strand 5	A	583	587	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	92	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	66	71	anti-parallel
Strand 4	B	487	491	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	136	145	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	161	166	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	178	first strand
Strand 2	B	186	192	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	224	230	anti-parallel
Strand 5	B	298	300	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	240	first strand
Strand 2	B	246	253	anti-parallel
Strand 3	B	269	275	anti-parallel
Strand 4	B	308	313	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	322	first strand
Strand 2	B	328	332	anti-parallel
Strand 3	B	339	343	anti-parallel
Strand 4	B	361	363	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	376	first strand
Strand 2	B	381	386	anti-parallel
Strand 3	B	391	396	anti-parallel
Strand 4	B	412	417	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	427	first strand
Strand 2	B	439	444	anti-parallel
Strand 3	B	460	466	anti-parallel
Strand 4	B	473	480	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	531	first strand
Strand 2	B	534	542	anti-parallel
Strand 3	B	545	546	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	531	first strand
Strand 2	B	534	542	anti-parallel
Strand 3	B	558	565	parallel
Strand 4	B	592	598	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	554	first strand
Strand 2	B	621	627	parallel
Strand 3	B	603	608	anti-parallel
Strand 4	B	574	578	anti-parallel
Strand 5	B	583	587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I5I