Analysis of interatomic Contacts of Structural Units in PDB entry:
5I61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I61 entry

There are 2 chains in PDB entry 5I61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 1ARG 534
A
 GLY 1ARG 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5I61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 12Right-handed alpha
Helix 2
AA2
B
16 29Right-handed alpha
Helix 3
AA3
B
43 56Right-handed alpha
Helix 4
AA4
B
57 59Right-handed 310
Helix 5
AA5
B
62 76Right-handed alpha
Helix 6
AA6
B
84 87Right-handed 310
Helix 7
AA7
B
88 98Right-handed alpha
Helix 8
AA8
B
99 101Right-handed 310
Helix 9
AA9
B
107 117Right-handed alpha
Helix 10
AB1
B
128 136Right-handed alpha
Helix 11
AB2
B
149 154Right-handed alpha
Helix 12
AB3
B
194 198Right-handed 310
Helix 13
AB4
B
207 229Right-handed alpha
Helix 14
AB5
B
231 236Right-handed alpha
Helix 15
AB6
B
236 251Right-handed alpha
Helix 16
AB7
B
270 285Right-handed alpha
Helix 17
AB8
B
287 297Right-handed alpha
Helix 18
AB9
B
299 304Right-handed alpha
Helix 19
AC1
B
327 346Right-handed alpha
Helix 20
AC2
B
369 379Right-handed alpha
Helix 21
AC3
B
385 389Right-handed 310
Helix 22
AC4
B
418 428Right-handed alpha
Helix 23
AC5
B
434 439Right-handed alpha
Helix 24
AC6
B
439 453Right-handed alpha
Helix 25
AC7
B
459 469Right-handed alpha
Helix 26
AC8
B
485 493Right-handed alpha
Helix 27
AC9
B
520 523Right-handed 310
Helix 28
AD1
B
524 532Right-handed alpha
Helix 29
AD2
A
4 12Right-handed alpha
Helix 30
AD3
A
16 29Right-handed alpha
Helix 31
AD4
A
43 56Right-handed alpha
Helix 32
AD5
A
57 59Right-handed 310
Helix 33
AD6
A
62 74Right-handed alpha
Helix 34
AD7
A
84 87Right-handed 310
Helix 35
AD8
A
88 98Right-handed alpha
Helix 36
AD9
A
99 101Right-handed 310
Helix 37
AE1
A
107 117Right-handed alpha
Helix 38
AE2
A
128 136Right-handed alpha
Helix 39
AE3
A
149 158Right-handed alpha
Helix 40
AE4
A
194 198Right-handed 310
Helix 41
AE5
A
207 229Right-handed alpha
Helix 42
AE6
A
231 236Right-handed alpha
Helix 43
AE7
A
236 251Right-handed alpha
Helix 44
AE8
A
270 285Right-handed alpha
Helix 45
AE9
A
287 297Right-handed alpha
Helix 46
AF1
A
298 303Right-handed 310
Helix 47
AF2
A
326 345Right-handed alpha
Helix 48
AF3
A
369 379Right-handed alpha
Helix 49
AF4
A
385 389Right-handed 310
Helix 50
AF5
A
418 427Right-handed alpha
Helix 51
AF6
A
434 452Right-handed alpha
Helix 52
AF7
A
453 455Right-handed 310
Helix 53
AF8
A
459 469Right-handed alpha
Helix 54
AF9
A
473 477Right-handed 310
Helix 55
AG1
A
485 494Right-handed alpha
Helix 56
AG2
A
501 506Right-handed alpha
Helix 57
AG3
A
519 523Right-handed 310
Helix 58
AG4
A
524 532Right-handed alpha
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There are 10 sheets in PDB entry 5I61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
168 173anti-parallel
Strand 3
B
176 180anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 205first strand
Strand 2
B
182 189anti-parallel
Strand 3
B
306 307parallel
Strand 4
B
313 314anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
360 363anti-parallel
Strand 3
B
257 259anti-parallel
Strand 4
B
390 392anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 398first strand
Strand 2
B
401 404anti-parallel
Strand 3
B
416 417anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 409first strand
Strand 2
B
412 413anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
428 429anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 165first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
176 180anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 205first strand
Strand 2
A
182 189anti-parallel
Strand 3
A
306 309parallel
Strand 4
A
312 314anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
360 363anti-parallel
Strand 3
A
257 261anti-parallel
Strand 4
A
390 392anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
401 404anti-parallel
Strand 3
A
416 417anti-parallel
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