Analysis of interatomic Contacts of Structural Units in PDB entry:
5I6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I6D entry

There are 4 chains in PDB entry 5I6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	GLY 308
B	ARG 3	ALA 307
C	HIS 0	TYR 306
D	ARG 3	ALA 323

There are 49 helices in PDB entry 5I6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed 310
Helix 2	AA2	A	51	65	Right-handed alpha
Helix 3	AA3	A	80	94	Right-handed alpha
Helix 4	AA4	A	106	117	Right-handed alpha
Helix 5	AA5	A	132	143	Right-handed alpha
Helix 6	AA6	A	154	164	Right-handed alpha
Helix 7	AA7	A	164	173	Right-handed alpha
Helix 8	AA8	A	186	200	Right-handed alpha
Helix 9	AA9	A	243	259	Right-handed alpha
Helix 10	AB1	A	263	284	Right-handed alpha
Helix 11	AB2	A	296	304	Right-handed 310
Helix 12	AB3	B	6	10	Right-handed 310
Helix 13	AB4	B	51	65	Right-handed alpha
Helix 14	AB5	B	80	94	Right-handed alpha
Helix 15	AB6	B	106	116	Right-handed alpha
Helix 16	AB7	B	127	143	Right-handed alpha
Helix 17	AB8	B	154	164	Right-handed alpha
Helix 18	AB9	B	164	173	Right-handed alpha
Helix 19	AC1	B	186	200	Right-handed alpha
Helix 20	AC2	B	232	236	Right-handed 310
Helix 21	AC3	B	243	259	Right-handed alpha
Helix 22	AC4	B	263	283	Right-handed alpha
Helix 23	AC5	B	296	304	Right-handed 310
Helix 24	AC6	C	6	10	Right-handed 310
Helix 25	AC7	C	51	65	Right-handed alpha
Helix 26	AC8	C	80	94	Right-handed alpha
Helix 27	AC9	C	106	116	Right-handed alpha
Helix 28	AD1	C	124	126	Right-handed 310
Helix 29	AD2	C	127	143	Right-handed alpha
Helix 30	AD3	C	154	164	Right-handed alpha
Helix 31	AD4	C	164	173	Right-handed alpha
Helix 32	AD5	C	186	200	Right-handed alpha
Helix 33	AD6	C	243	259	Right-handed alpha
Helix 34	AD7	C	263	283	Right-handed alpha
Helix 35	AD8	C	296	304	Right-handed 310
Helix 36	AD9	D	6	10	Right-handed 310
Helix 37	AE1	D	51	65	Right-handed alpha
Helix 38	AE2	D	80	94	Right-handed alpha
Helix 39	AE3	D	106	116	Right-handed alpha
Helix 40	AE4	D	131	143	Right-handed alpha
Helix 41	AE5	D	154	164	Right-handed alpha
Helix 42	AE6	D	164	173	Right-handed alpha
Helix 43	AE7	D	186	200	Right-handed alpha
Helix 44	AE8	D	214	217	Right-handed 310
Helix 45	AE9	D	232	236	Right-handed 310
Helix 46	AF1	D	243	259	Right-handed alpha
Helix 47	AF2	D	263	284	Right-handed alpha
Helix 48	AF3	D	297	304	Right-handed 310
Helix 49	AF4	D	313	318	Right-handed alpha

There are 9 sheets in PDB entry 5I6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	35	41	anti-parallel
Strand 3	A	287	293	parallel
Strand 4	A	178	182	parallel
Strand 5	A	204	210	parallel
Strand 6	A	238	242	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	77	first strand
Strand 2	A	96	101	parallel
Strand 3	A	119	122	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	35	41	anti-parallel
Strand 3	B	287	293	parallel
Strand 4	B	178	182	parallel
Strand 5	B	204	210	parallel
Strand 6	B	238	242	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	96	102	parallel
Strand 3	B	73	77	parallel
Strand 4	B	147	148	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	35	41	anti-parallel
Strand 3	C	287	293	parallel
Strand 4	C	178	182	parallel
Strand 5	C	204	210	parallel
Strand 6	C	238	242	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	96	102	parallel
Strand 3	C	73	77	parallel
Strand 4	C	147	148	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	35	41	anti-parallel
Strand 3	D	287	293	parallel
Strand 4	D	178	182	parallel
Strand 5	D	204	210	parallel
Strand 6	D	238	242	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	77	first strand
Strand 2	D	96	102	parallel
Strand 3	D	119	123	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	321	322	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I6D