Analysis of interatomic Contacts of Structural Units in PDB entry:
5I6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I6F entry

There are 2 chains in PDB entry 5I6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1186	UNK 2331
B	ILE 1186	PRO 1445

There are 77 helices in PDB entry 5I6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1198	1200	Right-handed 310
Helix 2	AA2	A	1201	1206	Right-handed alpha
Helix 3	AA3	A	1207	1210	Right-handed 310
Helix 4	AA4	A	1274	1281	Right-handed alpha
Helix 5	AA5	A	1283	1288	Right-handed alpha
Helix 6	AA6	A	1387	1408	Right-handed alpha
Helix 7	AA7	A	1428	1450	Right-handed alpha
Helix 8	AA8	A	1531	1540	Right-handed alpha
Helix 9	AA9	A	1545	1547	Right-handed 310
Helix 10	AB1	A	1548	1568	Right-handed alpha
Helix 11	AB2	A	1636	1640	Right-handed 310
Helix 12	AB3	A	1642	1660	Right-handed alpha
Helix 13	AB4	A	1704	1709	Right-handed alpha
Helix 14	AB5	A	1741	1760	Right-handed alpha
Helix 15	AB6	A	1774	1783	Right-handed alpha
Helix 16	AB7	A	1798	1807	Right-handed alpha
Helix 17	AB8	A	1814	1819	Right-handed alpha
Helix 18	AB9	A	1819	1824	Right-handed alpha
Helix 19	AC1	A	1835	1850	Right-handed alpha
Helix 20	AC2	A	1884	1889	Right-handed alpha
Helix 21	AC3	A	1966	1982	Right-handed alpha
Helix 22	AC4	A	2000	2006	Right-handed alpha
Helix 23	AC5	A	2007	2022	Right-handed alpha
Helix 24	AC6	A	2037	2043	Right-handed alpha
Helix 25	AC7	A	2044	2049	Right-handed 310
Helix 26	AC8	A	2067	2076	Right-handed alpha
Helix 27	AC9	A	2077	2089	Right-handed alpha
Helix 28	AD1	A	2089	2101	Right-handed alpha
Helix 29	AD2	A	2105	2140	Right-handed alpha
Helix 30	AD3	A	2140	2147	Right-handed alpha
Helix 31	AD4	A	2155	2157	Right-handed 310
Helix 32	AD5	A	2158	2185	Right-handed alpha
Helix 33	AD6	A	2202	2206	Right-handed 310
Helix 34	AD7	A	2211	2218	Right-handed alpha
Helix 35	AD8	A	2225	2236	Right-handed alpha
Helix 36	AD9	A	2236	2264	Right-handed alpha
Helix 37	AE1	A	2301	2306	Right-handed alpha
Helix 38	AE2	A	2325	2330	Right-handed alpha
Helix 39	AE3	B	1198	1200	Right-handed 310
Helix 40	AE4	B	1201	1206	Right-handed alpha
Helix 41	AE5	B	1207	1210	Right-handed 310
Helix 42	AE6	B	1274	1281	Right-handed alpha
Helix 43	AE7	B	1283	1288	Right-handed alpha
Helix 44	AE8	B	1328	1333	Right-handed alpha
Helix 45	AE9	B	1387	1408	Right-handed alpha
Helix 46	AF1	B	1428	1450	Right-handed alpha
Helix 47	AF2	B	1531	1540	Right-handed alpha
Helix 48	AF3	B	1545	1547	Right-handed 310
Helix 49	AF4	B	1548	1568	Right-handed alpha
Helix 50	AF5	B	1636	1640	Right-handed 310
Helix 51	AF6	B	1642	1660	Right-handed alpha
Helix 52	AF7	B	1704	1709	Right-handed alpha
Helix 53	AF8	B	1741	1760	Right-handed alpha
Helix 54	AF9	B	1774	1783	Right-handed alpha
Helix 55	AG1	B	1798	1807	Right-handed alpha
Helix 56	AG2	B	1814	1819	Right-handed alpha
Helix 57	AG3	B	1819	1824	Right-handed alpha
Helix 58	AG4	B	1835	1850	Right-handed alpha
Helix 59	AG5	B	1884	1889	Right-handed alpha
Helix 60	AG6	B	1966	1982	Right-handed alpha
Helix 61	AG7	B	2000	2006	Right-handed alpha
Helix 62	AG8	B	2007	2022	Right-handed alpha
Helix 63	AG9	B	2037	2043	Right-handed alpha
Helix 64	AH1	B	2044	2049	Right-handed 310
Helix 65	AH2	B	2067	2076	Right-handed alpha
Helix 66	AH3	B	2077	2089	Right-handed alpha
Helix 67	AH4	B	2089	2101	Right-handed alpha
Helix 68	AH5	B	2105	2140	Right-handed alpha
Helix 69	AH6	B	2140	2147	Right-handed alpha
Helix 70	AH7	B	2155	2157	Right-handed 310
Helix 71	AH8	B	2158	2185	Right-handed alpha
Helix 72	AH9	B	2202	2206	Right-handed 310
Helix 73	AI1	B	2211	2218	Right-handed alpha
Helix 74	AI2	B	2225	2236	Right-handed alpha
Helix 75	AI3	B	2236	2264	Right-handed alpha
Helix 76	AI4	B	2305	2310	Right-handed alpha
Helix 77	AI5	B	2318	2323	Right-handed alpha

There are 19 sheets in PDB entry 5I6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1189	1193	first strand
Strand 2	A	1254	1259	parallel
Strand 3	A	1292	1297	parallel
Strand 4	A	1309	1311	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1340	1345	first strand
Strand 2	A	1352	1359	anti-parallel
Strand 3	A	1367	1374	anti-parallel
Strand 4	A	1415	1421	parallel
Strand 5	A	1454	1459	parallel
Strand 6	A	1475	1480	anti-parallel
Strand 7	A	1489	1491	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1494	1496	first strand
Strand 2	A	1502	1504	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1595	1598	first strand
Strand 2	A	1584	1589	anti-parallel
Strand 3	A	1609	1614	anti-parallel
Strand 4	A	1628	1632	anti-parallel
Strand 5	A	1663	1667	parallel
Strand 6	A	1764	1768	parallel
Strand 7	A	1786	1789	parallel
Strand 8	A	1831	1833	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1685	1688	first strand
Strand 2	A	1698	1703	anti-parallel
Strand 3	A	1725	1733	anti-parallel
Strand 4	A	1715	1722	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1772	1773	first strand
Strand 2	A	1794	1795	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1890	1892	first strand
Strand 2	A	1897	1899	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1908	1910	first strand
Strand 2	A	1918	1925	anti-parallel
Strand 3	A	1928	1935	anti-parallel
Strand 4	A	1988	1991	parallel
Strand 5	A	2026	2030	parallel
Strand 6	A	2053	2058	parallel
Strand 7	A	2153	2154	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1940	1944	first strand
Strand 2	A	1956	1960	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1189	1191	first strand
Strand 2	B	1254	1259	parallel
Strand 3	B	1292	1297	parallel
Strand 4	B	1306	1307	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1189	1191	first strand
Strand 2	B	1254	1259	parallel
Strand 3	B	1292	1297	parallel
Strand 4	B	1310	1311	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1340	1345	first strand
Strand 2	B	1352	1359	anti-parallel
Strand 3	B	1366	1374	anti-parallel
Strand 4	B	1415	1421	parallel
Strand 5	B	1454	1461	parallel
Strand 6	B	1473	1480	anti-parallel
Strand 7	B	1489	1491	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1494	1496	first strand
Strand 2	B	1502	1504	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1595	1598	first strand
Strand 2	B	1584	1589	anti-parallel
Strand 3	B	1609	1614	anti-parallel
Strand 4	B	1628	1632	anti-parallel
Strand 5	B	1663	1667	parallel
Strand 6	B	1764	1768	parallel
Strand 7	B	1785	1789	parallel
Strand 8	B	1831	1833	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1685	1688	first strand
Strand 2	B	1698	1703	anti-parallel
Strand 3	B	1725	1733	anti-parallel
Strand 4	B	1715	1722	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1772	1773	first strand
Strand 2	B	1794	1795	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1890	1892	first strand
Strand 2	B	1897	1899	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1908	1910	first strand
Strand 2	B	1918	1925	anti-parallel
Strand 3	B	1928	1935	anti-parallel
Strand 4	B	1988	1991	parallel
Strand 5	B	2026	2030	parallel
Strand 6	B	2053	2058	parallel
Strand 7	B	2153	2154	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1940	1944	first strand
Strand 2	B	1956	1960	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I6F