Analysis of interatomic Contacts of Structural Units in PDB entry:
5I6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I6U entry

There is 1 chain in PDB entry 5I6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 109SER 1026
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5I6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 122Right-handed alpha
Helix 2
AA2
A
125 130Right-handed alpha
Helix 3
AA3
A
133 155Right-handed alpha
Helix 4
AA4
A
158 167Right-handed alpha
Helix 5
AA5
A
212 223Right-handed alpha
Helix 6
AA6
A
235 237Right-handed 310
Helix 7
AA7
A
261 266Right-handed alpha
Helix 8
AA8
A
279 289Right-handed alpha
Helix 9
AA9
A
527 534Right-handed alpha
Helix 10
AB1
A
534 542Right-handed alpha
Helix 11
AB2
A
545 551Right-handed alpha
Helix 12
AB3
A
557 569Right-handed alpha
Helix 13
AB4
A
575 583Right-handed alpha
Helix 14
AB5
A
589 601Right-handed alpha
Helix 15
AB6
A
604 619Right-handed alpha
Helix 16
AB7
A
627 640Right-handed alpha
Helix 17
AB8
A
640 653Right-handed alpha
Helix 18
AB9
A
660 674Right-handed alpha
Helix 19
AC1
A
675 706Right-handed alpha
Helix 20
AC2
A
707 720Right-handed alpha
Helix 21
AC3
A
721 729Right-handed alpha
Helix 22
AC4
A
746 749Right-handed 310
Helix 23
AC5
A
765 773Right-handed 310
Helix 24
AC6
A
784 803Right-handed alpha
Helix 25
AC7
A
834 839Right-handed alpha
Helix 26
AC8
A
850 852Right-handed 310
Helix 27
AC9
A
853 863Right-handed alpha
Helix 28
AD1
A
864 866Right-handed 310
Helix 29
AD2
A
867 890Right-handed alpha
Helix 30
AD3
A
895 897Right-handed 310
Helix 31
AD4
A
935 943Right-handed alpha
Helix 32
AD5
A
949 969Right-handed alpha
Helix 33
AD6
A
970 982Right-handed alpha
Helix 34
AD7
A
983 985Right-handed 310
Helix 35
AD8
A
995 1003Right-handed alpha
Helix 36
AD9
A
1007 1024Right-handed alpha
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There are 8 sheets in PDB entry 5I6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
206 208anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
273 278parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
249 250anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 380first strand
Strand 2
A
322 330anti-parallel
Strand 3
A
470 475anti-parallel
Strand 4
A
435 440anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
340 348anti-parallel
Strand 3
A
389 395anti-parallel
Strand 4
A
419 424anti-parallel
Strand 5
A
442 443anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 733first strand
Strand 2
A
736 741anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
750 751anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
775 780anti-parallel
Strand 4
A
822 826anti-parallel
Strand 5
A
815 819anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 833first strand
Strand 2
A
899 902anti-parallel
Strand 3
A
907 909anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il