Analysis of interatomic Contacts of Structural Units in PDB entry:
5I78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I78 entry

There are 2 chains in PDB entry 5I78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28LEU 332
B
 ALA 28LEU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5I78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 70Right-handed alpha
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
94 111Right-handed alpha
Helix 4
AA4
A
132 148Right-handed alpha
Helix 5
AA5
A
165 183Right-handed alpha
Helix 6
AA6
A
202 207Right-handed alpha
Helix 7
AA7
A
208 213Right-handed 310
Helix 8
AA8
A
243 260Right-handed alpha
Helix 9
AA9
A
273 289Right-handed alpha
Helix 10
AB1
A
318 329Right-handed alpha
Helix 11
AB2
A
330 332Right-handed 310
Helix 12
AB3
B
60 71Right-handed alpha
Helix 13
AB4
B
80 85Right-handed alpha
Helix 14
AB5
B
94 111Right-handed alpha
Helix 15
AB6
B
132 148Right-handed alpha
Helix 16
AB7
B
165 183Right-handed alpha
Helix 17
AB8
B
202 207Right-handed alpha
Helix 18
AB9
B
208 213Right-handed 310
Helix 19
AC1
B
243 260Right-handed alpha
Helix 20
AC2
B
273 289Right-handed alpha
Helix 21
AC3
B
318 324Right-handed alpha
Helix 22
AC4
B
324 330Right-handed alpha
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There are 4 sheets in PDB entry 5I78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
74 79parallel
Strand 3
A
114 119parallel
Strand 4
A
153 156parallel
Strand 5
A
190 193parallel
Strand 6
A
220 227parallel
Strand 7
A
263 269parallel
Strand 8
A
294 302parallel
Strand 9
A
34 39parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 39first strand
Strand 2
B
74 79parallel
Strand 3
B
114 119parallel
Strand 4
B
153 156parallel
Strand 5
B
190 193parallel
Strand 6
B
220 227parallel
Strand 7
B
263 269parallel
Strand 8
B
294 302parallel
Strand 9
B
34 39parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
128 129anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il