Analysis of interatomic Contacts of Structural Units in PDB entry:
5I79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I79 entry

There are 2 chains in PDB entry 5I79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 31LEU 332
B
 GLU 29LEU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5I79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 70Right-handed alpha
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
94 111Right-handed alpha
Helix 4
AA4
A
132 148Right-handed alpha
Helix 5
AA5
A
165 183Right-handed alpha
Helix 6
AA6
A
195 201Right-handed 310
Helix 7
AA7
A
202 207Right-handed alpha
Helix 8
AA8
A
208 213Right-handed 310
Helix 9
AA9
A
243 259Right-handed alpha
Helix 10
AB1
A
273 289Right-handed alpha
Helix 11
AB2
A
318 324Right-handed alpha
Helix 12
AB3
A
324 330Right-handed alpha
Helix 13
AB4
B
60 70Right-handed alpha
Helix 14
AB5
B
80 85Right-handed alpha
Helix 15
AB6
B
94 111Right-handed alpha
Helix 16
AB7
B
132 148Right-handed alpha
Helix 17
AB8
B
165 183Right-handed alpha
Helix 18
AB9
B
202 207Right-handed alpha
Helix 19
AC1
B
208 213Right-handed 310
Helix 20
AC2
B
243 259Right-handed alpha
Helix 21
AC3
B
273 289Right-handed alpha
Helix 22
AC4
B
318 329Right-handed alpha
Helix 23
AC5
B
330 332Right-handed 310
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There are 4 sheets in PDB entry 5I79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
74 79parallel
Strand 3
A
114 119parallel
Strand 4
A
153 156parallel
Strand 5
A
190 193parallel
Strand 6
A
220 226parallel
Strand 7
A
263 268parallel
Strand 8
A
294 302parallel
Strand 9
A
34 39parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 39first strand
Strand 2
B
74 79parallel
Strand 3
B
114 119parallel
Strand 4
B
153 156parallel
Strand 5
B
190 193parallel
Strand 6
B
220 227parallel
Strand 7
B
263 269parallel
Strand 8
B
294 302parallel
Strand 9
B
34 39parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
128 129anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il