Analysis of interatomic Contacts of Structural Units in PDB entry:
5I7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I7J entry

There are 2 chains in PDB entry 5I7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 43ILE 254
B
 SER 43LYS 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5I7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 62Right-handed alpha
Helix 2
AA2
A
65 70Right-handed alpha
Helix 3
AA3
A
71 76Right-handed 310
Helix 4
AA4
A
91 97Right-handed alpha
Helix 5
AA5
A
200 211Right-handed alpha
Helix 6
AA6
A
215 233Right-handed alpha
Helix 7
AA7
A
235 247Right-handed alpha
Helix 8
AA8
B
46 62Right-handed alpha
Helix 9
AA9
B
63 70Right-handed alpha
Helix 10
AB1
B
72 77Right-handed 310
Helix 11
AB2
B
92 97Right-handed alpha
Helix 12
AB3
B
196 203Right-handed alpha
Helix 13
AB4
B
203 233Right-handed alpha
Helix 14
AB5
B
235 248Right-handed alpha
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There are 4 sheets in PDB entry 5I7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 115first strand
Strand 2
A
128 142anti-parallel
Strand 3
A
149 167anti-parallel
Strand 4
A
173 182anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
128 142anti-parallel
Strand 3
A
149 167anti-parallel
Strand 4
A
188 191anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 115first strand
Strand 2
B
129 142anti-parallel
Strand 3
B
151 167anti-parallel
Strand 4
B
173 182anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
129 142anti-parallel
Strand 3
B
151 167anti-parallel
Strand 4
B
188 194anti-parallel
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