Analysis of interatomic Contacts of Structural Units in PDB entry:
5I82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I82 entry

There are 3 chains in PDB entry 5I82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	SER 535
B	ASP 3	SER 535
C	GLY 1	GLU 298

There are 98 helices in PDB entry 5I82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	58	64	Right-handed alpha
Helix 4	AA4	A	98	106	Right-handed alpha
Helix 5	AA5	A	113	118	Right-handed alpha
Helix 6	AA6	A	120	129	Right-handed alpha
Helix 7	AA7	A	152	157	Right-handed alpha
Helix 8	AA8	A	167	171	Right-handed alpha
Helix 9	AA9	A	175	183	Right-handed alpha
Helix 10	AB1	A	184	187	Right-handed 310
Helix 11	AB2	A	205	220	Right-handed alpha
Helix 12	AB3	A	224	231	Right-handed alpha
Helix 13	AB4	A	239	256	Right-handed alpha
Helix 14	AB5	A	257	259	Right-handed 310
Helix 15	AB6	A	260	267	Right-handed alpha
Helix 16	AB7	A	270	273	Right-handed 310
Helix 17	AB8	A	274	289	Right-handed alpha
Helix 18	AB9	A	290	295	Right-handed alpha
Helix 19	AC1	A	296	306	Right-handed alpha
Helix 20	AC2	A	310	315	Right-handed alpha
Helix 21	AC3	A	325	348	Right-handed alpha
Helix 22	AC4	A	352	357	Right-handed 310
Helix 23	AC5	A	358	377	Right-handed alpha
Helix 24	AC6	A	400	403	Right-handed 310
Helix 25	AC7	A	500	504	Right-handed 310
Helix 26	AC8	B	7	11	Right-handed 310
Helix 27	AC9	B	27	32	Right-handed alpha
Helix 28	AD1	B	58	64	Right-handed alpha
Helix 29	AD2	B	98	107	Right-handed alpha
Helix 30	AD3	B	113	119	Right-handed alpha
Helix 31	AD4	B	120	129	Right-handed alpha
Helix 32	AD5	B	152	157	Right-handed alpha
Helix 33	AD6	B	175	183	Right-handed alpha
Helix 34	AD7	B	184	186	Right-handed 310
Helix 35	AD8	B	205	222	Right-handed alpha
Helix 36	AD9	B	224	232	Right-handed alpha
Helix 37	AE1	B	239	255	Right-handed alpha
Helix 38	AE2	B	256	259	Right-handed 310
Helix 39	AE3	B	260	267	Right-handed alpha
Helix 40	AE4	B	270	273	Right-handed 310
Helix 41	AE5	B	274	289	Right-handed alpha
Helix 42	AE6	B	290	295	Right-handed alpha
Helix 43	AE7	B	296	305	Right-handed alpha
Helix 44	AE8	B	309	315	Right-handed alpha
Helix 45	AE9	B	325	348	Right-handed alpha
Helix 46	AF1	B	353	358	Right-handed alpha
Helix 47	AF2	B	358	377	Right-handed alpha
Helix 48	AF3	B	401	403	Right-handed 310
Helix 49	AF4	C	1	5	Right-handed 310
Helix 50	AF5	C	7	11	Right-handed 310
Helix 51	AF6	C	30	34	Right-handed 310
Helix 52	AF7	C	58	64	Right-handed alpha
Helix 53	AF8	C	98	106	Right-handed alpha
Helix 54	AF9	C	113	119	Right-handed alpha
Helix 55	AG1	C	120	128	Right-handed alpha
Helix 56	AG2	C	152	157	Right-handed alpha
Helix 57	AG3	C	168	171	Right-handed 310
Helix 58	AG4	C	175	183	Right-handed alpha
Helix 59	AG5	C	184	187	Right-handed 310
Helix 60	AG6	C	205	222	Right-handed alpha
Helix 61	AG7	C	224	232	Right-handed alpha
Helix 62	AG8	C	239	255	Right-handed alpha
Helix 63	AG9	C	256	259	Right-handed 310
Helix 64	AH1	C	260	267	Right-handed alpha
Helix 65	AH2	C	270	273	Right-handed 310
Helix 66	AH3	C	274	289	Right-handed alpha
Helix 67	AH4	C	290	295	Right-handed alpha
Helix 68	AH5	C	296	305	Right-handed alpha
Helix 69	AH6	C	309	315	Right-handed alpha
Helix 70	AH7	C	325	348	Right-handed alpha
Helix 71	AH8	C	353	357	Right-handed 310
Helix 72	AH9	C	358	377	Right-handed alpha
Helix 73	AI1	C	400	403	Right-handed 310
Helix 74	AI2	C	500	504	Right-handed 310
Helix 75	AI3	D	27	32	Right-handed alpha
Helix 76	AI4	D	58	64	Right-handed alpha
Helix 77	AI5	D	98	105	Right-handed alpha
Helix 78	AI6	D	113	119	Right-handed alpha
Helix 79	AI7	D	120	129	Right-handed alpha
Helix 80	AI8	D	152	157	Right-handed alpha
Helix 81	AI9	D	168	171	Right-handed 310
Helix 82	AJ1	D	175	183	Right-handed alpha
Helix 83	AJ2	D	184	186	Right-handed 310
Helix 84	AJ3	D	205	222	Right-handed alpha
Helix 85	AJ4	D	224	232	Right-handed alpha
Helix 86	AJ5	D	239	256	Right-handed alpha
Helix 87	AJ6	D	257	259	Right-handed 310
Helix 88	AJ7	D	260	267	Right-handed alpha
Helix 89	AJ8	D	270	273	Right-handed 310
Helix 90	AJ9	D	274	289	Right-handed alpha
Helix 91	AK1	D	290	295	Right-handed alpha
Helix 92	AK2	D	296	306	Right-handed alpha
Helix 93	AK3	D	310	315	Right-handed alpha
Helix 94	AK4	D	325	348	Right-handed alpha
Helix 95	AK5	D	352	357	Right-handed 310
Helix 96	AK6	D	358	377	Right-handed alpha
Helix 97	AK7	D	400	403	Right-handed 310
Helix 98	AK8	D	500	504	Right-handed 310

There are 28 sheets in PDB entry 5I82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	88	93	anti-parallel
Strand 3	A	133	139	parallel
Strand 4	A	147	151	anti-parallel
Strand 5	A	53	56	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	160	166	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	320	321	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	394	398	anti-parallel
Strand 3	A	412	422	anti-parallel
Strand 4	A	485	493	anti-parallel
Strand 5	A	441	443	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	394	398	anti-parallel
Strand 3	A	412	422	anti-parallel
Strand 4	A	485	493	anti-parallel
Strand 5	A	449	452	anti-parallel
Strand 6	A	455	463	anti-parallel
Strand 7	A	468	473	anti-parallel
Strand 8	A	431	435	anti-parallel
Strand 9	A	508	516	anti-parallel
Strand 10	A	523	530	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	532	534	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	478	479	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	88	93	anti-parallel
Strand 3	B	133	139	parallel
Strand 4	B	147	151	anti-parallel
Strand 5	B	53	56	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	160	166	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	320	321	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	391	first strand
Strand 2	B	394	398	anti-parallel
Strand 3	B	412	422	anti-parallel
Strand 4	B	485	493	anti-parallel
Strand 5	B	442	443	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	391	first strand
Strand 2	B	394	398	anti-parallel
Strand 3	B	412	422	anti-parallel
Strand 4	B	485	493	anti-parallel
Strand 5	B	449	452	anti-parallel
Strand 6	B	455	463	anti-parallel
Strand 7	B	468	473	anti-parallel
Strand 8	B	431	435	anti-parallel
Strand 9	B	508	518	anti-parallel
Strand 10	B	521	530	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	532	534	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	478	479	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	88	93	anti-parallel
Strand 3	C	133	139	parallel
Strand 4	C	147	151	anti-parallel
Strand 5	C	53	56	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	160	166	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	317	first strand
Strand 2	C	320	321	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	391	first strand
Strand 2	C	394	398	anti-parallel
Strand 3	C	412	422	anti-parallel
Strand 4	C	485	493	anti-parallel
Strand 5	C	442	443	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	391	first strand
Strand 2	C	394	398	anti-parallel
Strand 3	C	412	422	anti-parallel
Strand 4	C	485	493	anti-parallel
Strand 5	C	449	452	anti-parallel
Strand 6	C	455	463	anti-parallel
Strand 7	C	468	473	anti-parallel
Strand 8	C	431	435	anti-parallel
Strand 9	C	508	518	anti-parallel
Strand 10	C	521	530	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	407	first strand
Strand 2	C	532	534	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	429	first strand
Strand 2	C	477	479	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	88	93	anti-parallel
Strand 3	D	133	139	parallel
Strand 4	D	147	151	anti-parallel
Strand 5	D	53	56	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	79	84	anti-parallel
Strand 3	D	160	166	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	320	321	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	391	first strand
Strand 2	D	394	398	anti-parallel
Strand 3	D	412	422	anti-parallel
Strand 4	D	485	493	anti-parallel
Strand 5	D	441	443	anti-parallel

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There are 10 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	391	first strand
Strand 2	D	394	398	anti-parallel
Strand 3	D	412	422	anti-parallel
Strand 4	D	485	493	anti-parallel
Strand 5	D	449	452	anti-parallel
Strand 6	D	455	463	anti-parallel
Strand 7	D	468	473	anti-parallel
Strand 8	D	431	435	anti-parallel
Strand 9	D	508	516	anti-parallel
Strand 10	D	523	530	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	532	534	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	428	first strand
Strand 2	D	478	479	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I82

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I82