Analysis of interatomic Contacts of Structural Units in PDB entry:
5I84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I84 entry

There are 5 chains in PDB entry 5I84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 27	HIS 340
B	ASP 27	HIS 340
C	ASP 27	PRO 339
D	ASP 27	HIS 340
E	ASP 27	LEU 119

There are109 helices in PDB entry 5I84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	51	Right-handed alpha
Helix 2	AA2	A	61	71	Right-handed alpha
Helix 3	AA3	A	84	91	Right-handed alpha
Helix 4	AA4	A	121	130	Right-handed alpha
Helix 5	AA5	A	137	144	Right-handed alpha
Helix 6	AA6	A	163	177	Right-handed alpha
Helix 7	AA7	A	177	184	Right-handed alpha
Helix 8	AA8	A	200	211	Right-handed alpha
Helix 9	AA9	A	220	226	Right-handed alpha
Helix 10	AB1	A	244	255	Right-handed alpha
Helix 11	AB2	A	292	310	Right-handed alpha
Helix 12	AB3	A	310	317	Right-handed alpha
Helix 13	AB4	A	323	338	Right-handed alpha
Helix 14	AB5	B	36	49	Right-handed alpha
Helix 15	AB6	B	64	72	Right-handed alpha
Helix 16	AB7	B	84	92	Right-handed alpha
Helix 17	AB8	B	113	116	Right-handed 310
Helix 18	AB9	B	121	130	Right-handed alpha
Helix 19	AC1	B	137	144	Right-handed alpha
Helix 20	AC2	B	163	177	Right-handed alpha
Helix 21	AC3	B	177	184	Right-handed alpha
Helix 22	AC4	B	200	211	Right-handed alpha
Helix 23	AC5	B	220	226	Right-handed alpha
Helix 24	AC6	B	244	254	Right-handed alpha
Helix 25	AC7	B	292	309	Right-handed alpha
Helix 26	AC8	B	310	316	Right-handed alpha
Helix 27	AC9	B	323	338	Right-handed alpha
Helix 28	AD1	C	36	51	Right-handed alpha
Helix 29	AD2	C	61	71	Right-handed alpha
Helix 30	AD3	C	84	92	Right-handed alpha
Helix 31	AD4	C	121	129	Right-handed alpha
Helix 32	AD5	C	137	144	Right-handed alpha
Helix 33	AD6	C	163	177	Right-handed alpha
Helix 34	AD7	C	177	184	Right-handed alpha
Helix 35	AD8	C	200	211	Right-handed alpha
Helix 36	AD9	C	220	226	Right-handed alpha
Helix 37	AE1	C	244	254	Right-handed alpha
Helix 38	AE2	C	260	264	Right-handed 310
Helix 39	AE3	C	292	309	Right-handed alpha
Helix 40	AE4	C	310	317	Right-handed alpha
Helix 41	AE5	C	323	338	Right-handed alpha
Helix 42	AE6	D	33	35	Right-handed 310
Helix 43	AE7	D	36	51	Right-handed alpha
Helix 44	AE8	D	61	71	Right-handed alpha
Helix 45	AE9	D	84	91	Right-handed alpha
Helix 46	AF1	D	120	130	Right-handed alpha
Helix 47	AF2	D	137	142	Right-handed alpha
Helix 48	AF3	D	163	177	Right-handed alpha
Helix 49	AF4	D	177	184	Right-handed alpha
Helix 50	AF5	D	200	211	Right-handed alpha
Helix 51	AF6	D	220	226	Right-handed alpha
Helix 52	AF7	D	244	254	Right-handed alpha
Helix 53	AF8	D	292	309	Right-handed alpha
Helix 54	AF9	D	310	317	Right-handed alpha
Helix 55	AG1	D	323	338	Right-handed alpha
Helix 56	AG2	E	36	50	Right-handed alpha
Helix 57	AG3	E	61	71	Right-handed alpha
Helix 58	AG4	E	86	91	Right-handed alpha
Helix 59	AG5	E	121	129	Right-handed alpha
Helix 60	AG6	E	137	144	Right-handed alpha
Helix 61	AG7	E	164	177	Right-handed alpha
Helix 62	AG8	E	177	184	Right-handed alpha
Helix 63	AG9	E	199	211	Right-handed alpha
Helix 64	AH1	E	220	226	Right-handed alpha
Helix 65	AH2	E	244	253	Right-handed alpha
Helix 66	AH3	E	260	264	Right-handed 310
Helix 67	AH4	E	292	310	Right-handed alpha
Helix 68	AH5	E	310	315	Right-handed alpha
Helix 69	AH6	E	323	338	Right-handed alpha
Helix 70	AH7	F	36	51	Right-handed alpha
Helix 71	AH8	F	61	71	Right-handed alpha
Helix 72	AH9	F	84	92	Right-handed alpha
Helix 73	AI1	F	120	130	Right-handed alpha
Helix 74	AI2	F	137	143	Right-handed alpha
Helix 75	AI3	F	163	177	Right-handed alpha
Helix 76	AI4	F	177	184	Right-handed alpha
Helix 77	AI5	F	200	211	Right-handed alpha
Helix 78	AI6	F	220	226	Right-handed alpha
Helix 79	AI7	F	244	253	Right-handed alpha
Helix 80	AI8	F	256	260	Right-handed 310
Helix 81	AI9	F	292	309	Right-handed alpha
Helix 82	AJ1	F	310	317	Right-handed alpha
Helix 83	AJ2	F	323	338	Right-handed alpha
Helix 84	AJ3	G	36	51	Right-handed alpha
Helix 85	AJ4	G	65	71	Right-handed alpha
Helix 86	AJ5	G	84	91	Right-handed alpha
Helix 87	AJ6	G	120	129	Right-handed alpha
Helix 88	AJ7	G	137	142	Right-handed alpha
Helix 89	AJ8	G	163	177	Right-handed alpha
Helix 90	AJ9	G	177	184	Right-handed alpha
Helix 91	AK1	G	200	211	Right-handed alpha
Helix 92	AK2	G	220	226	Right-handed alpha
Helix 93	AK3	G	244	254	Right-handed alpha
Helix 94	AK4	G	292	310	Right-handed alpha
Helix 95	AK5	G	310	316	Right-handed alpha
Helix 96	AK6	G	323	338	Right-handed alpha
Helix 97	AK7	H	36	51	Right-handed alpha
Helix 98	AK8	H	61	72	Right-handed alpha
Helix 99	AK9	H	84	92	Right-handed alpha
Helix 100	AL1	H	120	129	Right-handed alpha
Helix 101	AL2	H	137	143	Right-handed alpha
Helix 102	AL3	H	163	177	Right-handed alpha
Helix 103	AL4	H	177	184	Right-handed alpha
Helix 104	AL5	H	201	211	Right-handed alpha
Helix 105	AL6	H	220	226	Right-handed alpha
Helix 106	AL7	H	244	252	Right-handed alpha
Helix 107	AL8	H	292	308	Right-handed alpha
Helix 108	AL9	H	310	317	Right-handed alpha
Helix 109	AM1	H	323	334	Right-handed alpha

There are 23 sheets in PDB entry 5I84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	279	287	anti-parallel
Strand 3	A	93	107	anti-parallel
Strand 4	A	215	219	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	279	287	anti-parallel
Strand 3	A	93	107	anti-parallel
Strand 4	A	229	230	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	232	234	parallel
Strand 3	A	240	241	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	279	287	anti-parallel
Strand 3	B	93	107	anti-parallel
Strand 4	B	214	219	anti-parallel
Strand 5	B	155	159	parallel
Strand 6	B	196	198	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	279	287	anti-parallel
Strand 3	B	93	107	anti-parallel
Strand 4	B	229	230	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	232	234	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	55	58	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	79	first strand
Strand 2	C	280	287	anti-parallel
Strand 3	C	93	101	anti-parallel
Strand 4	C	320	321	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	107	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	155	159	parallel
Strand 4	C	196	198	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	232	234	parallel
Strand 3	C	240	241	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	279	287	anti-parallel
Strand 3	D	93	107	anti-parallel
Strand 4	D	214	219	anti-parallel
Strand 5	D	155	159	parallel
Strand 6	D	196	198	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	232	234	parallel
Strand 3	D	240	241	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	79	first strand
Strand 2	E	279	287	anti-parallel
Strand 3	E	93	108	anti-parallel
Strand 4	E	214	219	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	120	first strand
Strand 2	E	232	234	parallel
Strand 3	E	240	241	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	159	first strand
Strand 2	E	196	198	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	279	287	anti-parallel
Strand 3	F	93	107	anti-parallel
Strand 4	F	214	219	anti-parallel
Strand 5	F	155	159	parallel
Strand 6	F	196	198	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	279	287	anti-parallel
Strand 3	F	93	107	anti-parallel
Strand 4	F	229	230	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	232	234	parallel
Strand 3	F	240	241	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	79	first strand
Strand 2	G	279	287	anti-parallel
Strand 3	G	93	107	anti-parallel
Strand 4	G	214	219	anti-parallel
Strand 5	G	155	159	parallel
Strand 6	G	196	198	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	79	first strand
Strand 2	G	279	287	anti-parallel
Strand 3	G	93	107	anti-parallel
Strand 4	G	229	230	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	119	first strand
Strand 2	G	232	234	parallel
Strand 3	G	240	241	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	279	287	anti-parallel
Strand 3	H	93	108	anti-parallel
Strand 4	H	229	234	anti-parallel
Strand 5	H	214	219	first strand
Strand 6	H	155	159	parallel
Strand 7	H	196	198	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	119	first strand
Strand 2	H	229	234	parallel
Strand 3	H	93	108	anti-parallel
Strand 4	H	240	241	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I84

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I84