Analysis of interatomic Contacts of Structural Units in PDB entry:
5I87

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I87 entry

There are 2 chains in PDB entry 5I87 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	UNK 6	UNK 897
B	UNK 6	UNK 894

There are 52 helices in PDB entry 5I87. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	36	Right-handed alpha
Helix 2	AA2	A	165	181	Right-handed alpha
Helix 3	AA3	A	189	207	Right-handed alpha
Helix 4	AA4	A	208	222	Right-handed alpha
Helix 5	AA5	A	227	244	Right-handed alpha
Helix 6	AA6	A	254	267	Right-handed alpha
Helix 7	AA7	A	275	279	Right-handed alpha
Helix 8	AA8	A	282	291	Right-handed alpha
Helix 9	AA9	A	294	318	Right-handed alpha
Helix 10	AB1	A	321	333	Right-handed alpha
Helix 11	AB2	A	337	349	Right-handed alpha
Helix 12	AB3	A	349	364	Right-handed alpha
Helix 13	AB4	A	372	384	Right-handed alpha
Helix 14	AB5	A	391	403	Right-handed alpha
Helix 15	AB6	A	408	424	Right-handed alpha
Helix 16	AB7	A	431	441	Right-handed alpha
Helix 17	AB8	A	449	455	Right-handed alpha
Helix 18	AB9	A	458	474	Right-handed alpha
Helix 19	AC1	A	475	477	Right-handed 310
Helix 20	AC2	A	557	572	Right-handed alpha
Helix 21	AC3	A	617	631	Right-handed alpha
Helix 22	AC4	A	632	638	Right-handed alpha
Helix 23	AC5	A	690	694	Right-handed 310
Helix 24	AC6	A	750	780	Right-handed alpha
Helix 25	AC7	A	801	823	Right-handed alpha
Helix 26	AC8	B	7	36	Right-handed alpha
Helix 27	AC9	B	42	46	Right-handed 310
Helix 28	AD1	B	164	181	Right-handed alpha
Helix 29	AD2	B	189	207	Right-handed alpha
Helix 30	AD3	B	208	222	Right-handed alpha
Helix 31	AD4	B	227	244	Right-handed alpha
Helix 32	AD5	B	254	267	Right-handed alpha
Helix 33	AD6	B	272	281	Right-handed alpha
Helix 34	AD7	B	282	291	Right-handed alpha
Helix 35	AD8	B	294	318	Right-handed alpha
Helix 36	AD9	B	321	334	Right-handed alpha
Helix 37	AE1	B	337	349	Right-handed alpha
Helix 38	AE2	B	349	364	Right-handed alpha
Helix 39	AE3	B	372	385	Right-handed alpha
Helix 40	AE4	B	391	403	Right-handed alpha
Helix 41	AE5	B	408	424	Right-handed alpha
Helix 42	AE6	B	429	441	Right-handed alpha
Helix 43	AE7	B	449	454	Right-handed alpha
Helix 44	AE8	B	458	474	Right-handed alpha
Helix 45	AE9	B	475	477	Right-handed 310
Helix 46	AF1	B	557	572	Right-handed alpha
Helix 47	AF2	B	616	631	Right-handed alpha
Helix 48	AF3	B	632	638	Right-handed alpha
Helix 49	AF4	B	690	695	Right-handed 310
Helix 50	AF5	B	751	780	Right-handed alpha
Helix 51	AF6	B	802	815	Right-handed alpha
Helix 52	AF7	B	816	822	Right-handed alpha

There are 10 sheets in PDB entry 5I87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	55	first strand
Strand 2	A	58	66	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	82	84	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	113	117	anti-parallel
Strand 3	A	120	124	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	487	first strand
Strand 2	A	491	499	anti-parallel
Strand 3	A	547	555	anti-parallel
Strand 4	A	603	610	parallel
Strand 5	A	640	648	parallel
Strand 6	A	670	675	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	709	first strand
Strand 2	A	717	723	anti-parallel
Strand 3	A	735	743	anti-parallel
Strand 4	A	787	796	parallel
Strand 5	A	824	832	parallel
Strand 6	A	844	849	anti-parallel
Strand 7	A	857	861	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	864	first strand
Strand 2	A	873	874	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	62	66	anti-parallel
Strand 3	B	71	75	anti-parallel
Strand 4	B	81	84	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	102	103	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	122	124	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	486	first strand
Strand 2	B	492	499	anti-parallel
Strand 3	B	547	555	anti-parallel
Strand 4	B	603	609	parallel
Strand 5	B	640	647	parallel
Strand 6	B	670	675	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	710	first strand
Strand 2	B	717	721	anti-parallel
Strand 3	B	738	743	anti-parallel
Strand 4	B	787	796	parallel
Strand 5	B	824	832	parallel
Strand 6	B	843	849	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I87

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I87