Analysis of interatomic Contacts of Structural Units in PDB entry:
5I8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I8D entry

There is 1 chain in PDB entry 5I8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1929VAL 2263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5I8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1969 1974Right-handed 310
Helix 2
AA2
A
1983 1985Right-handed 310
Helix 3
AA3
A
2005 2009Right-handed 310
Helix 4
AA4
A
2075 2079Right-handed 310
Helix 5
AA5
A
2244 2248Right-handed 310
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There are 9 sheets in PDB entry 5I8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1935 1936first strand
Strand 2
A
1964 1965anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1956 1957first strand
Strand 2
A
1940 1946anti-parallel
Strand 3
A
2027 2037parallel
Strand 4
A
2013 2021anti-parallel
Strand 5
A
1976 1980anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1987 1989first strand
Strand 2
A
1996 1998anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2045 2046first strand
Strand 2
A
2070 2071anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2050 2056first strand
Strand 2
A
2132 2142parallel
Strand 3
A
2116 2124anti-parallel
Strand 4
A
2082 2087anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2064 2067first strand
Strand 2
A
2101 2104anti-parallel
Strand 3
A
2093 2095anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2150 2151first strand
Strand 2
A
2175 2176anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2155 2161first strand
Strand 2
A
2254 2261parallel
Strand 3
A
2230 2239anti-parallel
Strand 4
A
2184 2194anti-parallel
Strand 5
A
2200 2201anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2169 2172first strand
Strand 2
A
2216 2219anti-parallel
Strand 3
A
2208 2210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il