Analysis of interatomic Contacts of Structural Units in PDB entry:
5I8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I8Q entry

There are 2 chains in PDB entry 5I8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLN 755
B
 LYS 4LEU 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5I8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
18 34Right-handed alpha
Helix 3
AA3
A
59 68Right-handed alpha
Helix 4
AA4
A
80 91Right-handed alpha
Helix 5
AA5
A
95 97Right-handed 310
Helix 6
AA6
A
98 107Right-handed alpha
Helix 7
AA7
A
121 134Right-handed alpha
Helix 8
AA8
A
149 164Right-handed alpha
Helix 9
AA9
A
193 203Right-handed alpha
Helix 10
AB1
A
221 238Right-handed alpha
Helix 11
AB2
A
251 259Right-handed alpha
Helix 12
AB3
A
285 300Right-handed alpha
Helix 13
AB4
A
312 334Right-handed alpha
Helix 14
AB5
A
349 355Right-handed alpha
Helix 15
AB6
A
356 358Right-handed 310
Helix 16
AB7
A
417 427Right-handed alpha
Helix 17
AB8
A
441 447Right-handed alpha
Helix 18
AB9
A
464 473Right-handed alpha
Helix 19
AC1
A
487 501Right-handed alpha
Helix 20
AC2
A
511 518Right-handed alpha
Helix 21
AC3
A
523 533Right-handed alpha
Helix 22
AC4
A
534 537Right-handed 310
Helix 23
AC5
A
538 550Right-handed alpha
Helix 24
AC6
A
561 573Right-handed alpha
Helix 25
AC7
A
577 590Right-handed alpha
Helix 26
AC8
A
591 598Right-handed alpha
Helix 27
AC9
A
599 604Right-handed alpha
Helix 28
AD1
A
609 630Right-handed alpha
Helix 29
AD2
A
642 656Right-handed alpha
Helix 30
AD3
A
714 722Right-handed alpha
Helix 31
AD4
A
727 731Right-handed 310
Helix 32
AD5
A
735 755Right-handed alpha
Helix 33
AD6
B
13 18Right-handed alpha
Helix 34
AD7
B
18 34Right-handed alpha
Helix 35
AD8
B
59 68Right-handed alpha
Helix 36
AD9
B
80 91Right-handed alpha
Helix 37
AE1
B
95 97Right-handed 310
Helix 38
AE2
B
98 107Right-handed alpha
Helix 39
AE3
B
121 134Right-handed alpha
Helix 40
AE4
B
149 164Right-handed alpha
Helix 41
AE5
B
193 203Right-handed alpha
Helix 42
AE6
B
221 238Right-handed alpha
Helix 43
AE7
B
251 259Right-handed alpha
Helix 44
AE8
B
285 300Right-handed alpha
Helix 45
AE9
B
312 334Right-handed alpha
Helix 46
AF1
B
349 355Right-handed alpha
Helix 47
AF2
B
356 358Right-handed 310
Helix 48
AF3
B
417 427Right-handed alpha
Helix 49
AF4
B
441 447Right-handed alpha
Helix 50
AF5
B
464 473Right-handed alpha
Helix 51
AF6
B
487 501Right-handed alpha
Helix 52
AF7
B
511 518Right-handed alpha
Helix 53
AF8
B
523 533Right-handed alpha
Helix 54
AF9
B
534 537Right-handed 310
Helix 55
AG1
B
538 550Right-handed alpha
Helix 56
AG2
B
561 573Right-handed alpha
Helix 57
AG3
B
577 590Right-handed alpha
Helix 58
AG4
B
591 598Right-handed alpha
Helix 59
AG5
B
599 604Right-handed alpha
Helix 60
AG6
B
609 630Right-handed alpha
Helix 61
AG7
B
642 656Right-handed alpha
Helix 62
AG8
B
714 722Right-handed alpha
Helix 63
AG9
B
727 731Right-handed 310
Helix 64
AH1
B
735 755Right-handed alpha
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There are 8 sheets in PDB entry 5I8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
172 176anti-parallel
Strand 3
A
188 192parallel
Strand 4
A
142 147parallel
Strand 5
A
209 214parallel
Strand 6
A
242 247parallel
Strand 7
A
111 116parallel
Strand 8
A
264 267parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
434 438parallel
Strand 3
A
388 393parallel
Strand 4
A
305 309parallel
Strand 5
A
370 375parallel
Strand 6
A
339 344parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 403first strand
Strand 2
A
408 415anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 663first strand
Strand 2
A
670 672anti-parallel
Strand 3
A
678 681anti-parallel
Strand 4
A
705 712parallel
Strand 5
A
693 701anti-parallel
Strand 6
A
660 663anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
172 176anti-parallel
Strand 3
B
188 192parallel
Strand 4
B
142 147parallel
Strand 5
B
209 214parallel
Strand 6
B
242 247parallel
Strand 7
B
111 116parallel
Strand 8
B
264 267parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 278first strand
Strand 2
B
434 438parallel
Strand 3
B
388 393parallel
Strand 4
B
305 309parallel
Strand 5
B
370 375parallel
Strand 6
B
339 344parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 403first strand
Strand 2
B
408 415anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
660 663first strand
Strand 2
B
670 672anti-parallel
Strand 3
B
678 681anti-parallel
Strand 4
B
705 712parallel
Strand 5
B
693 701anti-parallel
Strand 6
B
660 663anti-parallel
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