Analysis of interatomic Contacts of Structural Units in PDB entry:
5I8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I8R entry

There are 3 chains in PDB entry 5I8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 84MET 611
B
 TRP 84MET 611
C
 TRP 84VAL 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 5I8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 103Right-handed alpha
Helix 2
AA2
A
105 123Right-handed alpha
Helix 3
AA3
A
127 148Right-handed alpha
Helix 4
AA4
A
152 162Right-handed alpha
Helix 5
AA5
A
253 263Right-handed alpha
Helix 6
AA6
A
264 268Right-handed 310
Helix 7
AA7
A
288 308Right-handed alpha
Helix 8
AA8
A
338 349Right-handed alpha
Helix 9
AA9
A
354 365Right-handed alpha
Helix 10
AB1
A
381 385Right-handed 310
Helix 11
AB2
A
389 394Right-handed 310
Helix 12
AB3
A
398 400Right-handed 310
Helix 13
AB4
A
401 417Right-handed alpha
Helix 14
AB5
A
427 431Right-handed 310
Helix 15
AB6
A
432 446Right-handed alpha
Helix 16
AB7
A
520 525Right-handed alpha
Helix 17
AB8
A
539 544Right-handed alpha
Helix 18
AB9
A
549 563Right-handed alpha
Helix 19
AC1
A
563 575Right-handed alpha
Helix 20
AC2
A
585 598Right-handed alpha
Helix 21
AC3
A
603 608Right-handed 310
Helix 22
AC4
B
89 105Right-handed alpha
Helix 23
AC5
B
105 123Right-handed alpha
Helix 24
AC6
B
127 148Right-handed alpha
Helix 25
AC7
B
152 162Right-handed alpha
Helix 26
AC8
B
253 263Right-handed alpha
Helix 27
AC9
B
264 268Right-handed 310
Helix 28
AD1
B
288 308Right-handed alpha
Helix 29
AD2
B
338 349Right-handed alpha
Helix 30
AD3
B
354 365Right-handed alpha
Helix 31
AD4
B
381 385Right-handed 310
Helix 32
AD5
B
389 394Right-handed 310
Helix 33
AD6
B
398 400Right-handed 310
Helix 34
AD7
B
401 417Right-handed alpha
Helix 35
AD8
B
427 431Right-handed 310
Helix 36
AD9
B
432 446Right-handed alpha
Helix 37
AE1
B
520 525Right-handed alpha
Helix 38
AE2
B
539 544Right-handed alpha
Helix 39
AE3
B
549 563Right-handed alpha
Helix 40
AE4
B
563 575Right-handed alpha
Helix 41
AE5
B
585 598Right-handed alpha
Helix 42
AE6
B
603 608Right-handed 310
Helix 43
AE7
C
87 105Right-handed alpha
Helix 44
AE8
C
105 123Right-handed alpha
Helix 45
AE9
C
127 148Right-handed alpha
Helix 46
AF1
C
152 162Right-handed alpha
Helix 47
AF2
C
253 263Right-handed alpha
Helix 48
AF3
C
264 268Right-handed 310
Helix 49
AF4
C
288 308Right-handed alpha
Helix 50
AF5
C
338 349Right-handed alpha
Helix 51
AF6
C
354 365Right-handed alpha
Helix 52
AF7
C
381 385Right-handed 310
Helix 53
AF8
C
389 394Right-handed 310
Helix 54
AF9
C
398 400Right-handed 310
Helix 55
AG1
C
401 417Right-handed alpha
Helix 56
AG2
C
427 431Right-handed 310
Helix 57
AG3
C
432 446Right-handed alpha
Helix 58
AG4
C
520 525Right-handed alpha
Helix 59
AG5
C
539 544Right-handed alpha
Helix 60
AG6
C
549 563Right-handed alpha
Helix 61
AG7
C
563 575Right-handed alpha
Helix 62
AG8
C
585 598Right-handed alpha
Helix 63
AG9
C
603 608Right-handed 310
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There are 6 sheets in PDB entry 5I8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
272 275parallel
Strand 3
A
198 204parallel
Strand 4
A
494 501anti-parallel
Strand 5
A
511 518anti-parallel
Strand 6
A
534 538anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 372first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
419 423parallel
Strand 4
A
450 455parallel
Strand 5
A
475 481parallel
Strand 6
A
462 467anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
272 275parallel
Strand 3
B
198 204parallel
Strand 4
B
494 501anti-parallel
Strand 5
B
511 519anti-parallel
Strand 6
B
533 538anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 372first strand
Strand 2
B
375 379anti-parallel
Strand 3
B
419 423parallel
Strand 4
B
450 455parallel
Strand 5
B
475 481parallel
Strand 6
B
462 467anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
312 314first strand
Strand 2
C
272 275parallel
Strand 3
C
198 204parallel
Strand 4
C
494 501anti-parallel
Strand 5
C
511 518anti-parallel
Strand 6
C
534 538anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
367 372first strand
Strand 2
C
375 379anti-parallel
Strand 3
C
419 423parallel
Strand 4
C
450 455parallel
Strand 5
C
475 481parallel
Strand 6
C
462 467anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il