Analysis of interatomic Contacts of Structural Units in PDB entry:
5I8U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I8U entry

There are 7 chains in PDB entry 5I8U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ASP 5	GLU 206
A	ASP 5	ARG 207
B	PHE 6	ARG 207
C	ASP 5	ARG 207
D	ASP 5	ARG 207
E	PHE 6	GLU 206
F	PHE 6	LEU 108

There are 30 helices in PDB entry 5I8U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	85	99	Right-handed alpha
Helix 2	AA2	G	152	161	Right-handed alpha
Helix 3	AA3	G	166	181	Right-handed alpha
Helix 4	AA4	G	198	205	Right-handed alpha
Helix 5	AA5	A	85	99	Right-handed alpha
Helix 6	AA6	A	152	161	Right-handed alpha
Helix 7	AA7	A	166	181	Right-handed alpha
Helix 8	AA8	A	198	203	Right-handed alpha
Helix 9	AA9	B	85	99	Right-handed alpha
Helix 10	AB1	B	152	161	Right-handed alpha
Helix 11	AB2	B	166	181	Right-handed alpha
Helix 12	AB3	B	198	206	Right-handed alpha
Helix 13	AB4	C	65	68	Right-handed 310
Helix 14	AB5	C	85	99	Right-handed alpha
Helix 15	AB6	C	152	161	Right-handed alpha
Helix 16	AB7	C	166	181	Right-handed alpha
Helix 17	AB8	C	198	204	Right-handed alpha
Helix 18	AB9	D	85	99	Right-handed alpha
Helix 19	AC1	D	152	160	Right-handed alpha
Helix 20	AC2	D	166	181	Right-handed alpha
Helix 21	AC3	D	198	205	Right-handed alpha
Helix 22	AC4	E	85	99	Right-handed alpha
Helix 23	AC5	E	152	161	Right-handed alpha
Helix 24	AC6	E	166	181	Right-handed alpha
Helix 25	AC7	E	198	203	Right-handed alpha
Helix 26	AC8	F	65	68	Right-handed 310
Helix 27	AC9	F	85	99	Right-handed alpha
Helix 28	AD1	F	152	161	Right-handed alpha
Helix 29	AD2	F	166	181	Right-handed alpha
Helix 30	AD3	F	198	204	Right-handed alpha

There are 22 sheets in PDB entry 5I8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	16	first strand
Strand 2	G	20	28	anti-parallel
Strand 3	G	34	42	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	121	132	parallel
Strand 4	G	100	112	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	73	first strand
Strand 2	G	56	63	anti-parallel
Strand 3	G	146	151	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	16	first strand
Strand 2	A	20	27	anti-parallel
Strand 3	A	35	42	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	121	132	parallel
Strand 4	A	100	112	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	73	first strand
Strand 2	A	56	64	anti-parallel
Strand 3	A	146	151	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	13	16	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	34	42	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	122	131	parallel
Strand 4	B	101	111	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	73	first strand
Strand 2	B	56	64	anti-parallel
Strand 3	B	147	151	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	16	first strand
Strand 2	C	20	28	anti-parallel
Strand 3	C	34	42	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	45	50	anti-parallel
Strand 3	C	121	132	parallel
Strand 4	C	100	112	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	56	63	anti-parallel
Strand 3	C	146	151	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	15	first strand
Strand 2	D	20	28	anti-parallel
Strand 3	D	34	42	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	45	50	anti-parallel
Strand 3	D	121	132	parallel
Strand 4	D	100	112	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	73	first strand
Strand 2	D	56	64	anti-parallel
Strand 3	D	147	151	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	16	first strand
Strand 2	E	20	28	anti-parallel
Strand 3	E	34	42	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	121	131	parallel
Strand 4	E	101	112	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	73	first strand
Strand 2	E	56	64	anti-parallel
Strand 3	E	146	151	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	16	first strand
Strand 2	F	20	28	anti-parallel
Strand 3	F	34	42	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	121	132	parallel
Strand 4	F	100	112	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	73	first strand
Strand 2	F	56	64	anti-parallel
Strand 3	F	146	151	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I8U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I8U