Analysis of interatomic Contacts of Structural Units in PDB entry:
5I99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I99 entry

There is 1 chain in PDB entry 5I99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 404GLU 801
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5I99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
470 474Right-handed 310
Helix 2
AA2
A
544 548Right-handed 310
Helix 3
AA3
A
568 572Right-handed 310
Helix 4
AA4
A
725 729Right-handed 310
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There are 12 sheets in PDB entry 5I99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
434 436anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 422first strand
Strand 2
A
486 497parallel
Strand 3
A
475 483anti-parallel
Strand 4
A
440 445anti-parallel
Strand 5
A
448 449anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
A
464 466anti-parallel
Strand 3
A
456 458anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 504first strand
Strand 2
A
522 524anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 512first strand
Strand 2
A
584 595parallel
Strand 3
A
573 581anti-parallel
Strand 4
A
532 537anti-parallel
Strand 5
A
540 542anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 519first strand
Strand 2
A
562 564anti-parallel
Strand 3
A
551 553anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 607first strand
Strand 2
A
614 619anti-parallel
Strand 3
A
659 663anti-parallel
Strand 4
A
647 649anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
644 645first strand
Strand 2
A
628 636anti-parallel
Strand 3
A
670 679anti-parallel
Strand 4
A
682 683anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 654first strand
Strand 2
A
628 636anti-parallel
Strand 3
A
670 679anti-parallel
Strand 4
A
693 694anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 709first strand
Strand 2
A
716 720anti-parallel
Strand 3
A
760 764anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 753first strand
Strand 2
A
735 742anti-parallel
Strand 3
A
773 782anti-parallel
Strand 4
A
785 789anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 753first strand
Strand 2
A
735 742anti-parallel
Strand 3
A
773 782anti-parallel
Strand 4
A
793 796anti-parallel
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