Analysis of interatomic Contacts of Structural Units in PDB entry:
5I9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5I9E entry

There are 4 chains in PDB entry 5I9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 0	ARG 489
B	VAL 5	PHE 375
C	MET 1	ARG 482
D	VAL 5	PRO 112

There are 80 helices in PDB entry 5I9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	63	Right-handed alpha
Helix 2	AA2	A	82	97	Right-handed alpha
Helix 3	AA3	A	117	130	Right-handed alpha
Helix 4	AA4	A	142	150	Right-handed alpha
Helix 5	AA5	A	186	198	Right-handed alpha
Helix 6	AA6	A	226	236	Right-handed alpha
Helix 7	AA7	A	237	246	Right-handed alpha
Helix 8	AA8	A	253	256	Right-handed 310
Helix 9	AA9	A	257	262	Right-handed alpha
Helix 10	AB1	A	281	291	Right-handed alpha
Helix 11	AB2	A	384	396	Right-handed alpha
Helix 12	AB3	A	397	407	Right-handed alpha
Helix 13	AB4	A	412	417	Right-handed 310
Helix 14	AB5	A	419	432	Right-handed alpha
Helix 15	AB6	A	445	449	Right-handed 310
Helix 16	AB7	A	450	460	Right-handed alpha
Helix 17	AB8	A	461	469	Right-handed 310
Helix 18	AB9	A	472	479	Right-handed alpha
Helix 19	AC1	B	55	61	Right-handed alpha
Helix 20	AC2	B	78	91	Right-handed alpha
Helix 21	AC3	B	97	101	Right-handed 310
Helix 22	AC4	B	112	126	Right-handed alpha
Helix 23	AC5	B	137	145	Right-handed alpha
Helix 24	AC6	B	181	195	Right-handed alpha
Helix 25	AC7	B	205	216	Right-handed alpha
Helix 26	AC8	B	222	232	Right-handed alpha
Helix 27	AC9	B	252	257	Right-handed alpha
Helix 28	AD1	B	258	262	Right-handed 310
Helix 29	AD2	B	263	268	Right-handed 310
Helix 30	AD3	B	273	283	Right-handed alpha
Helix 31	AD4	B	289	295	Right-handed alpha
Helix 32	AD5	B	301	305	Right-handed 310
Helix 33	AD6	B	308	321	Right-handed alpha
Helix 34	AD7	B	334	336	Right-handed 310
Helix 35	AD8	B	337	349	Right-handed alpha
Helix 36	AD9	B	351	355	Right-handed 310
Helix 37	AE1	B	358	366	Right-handed alpha
Helix 38	AE2	B	369	374	Right-handed alpha
Helix 39	AE3	C	58	63	Right-handed alpha
Helix 40	AE4	C	82	97	Right-handed alpha
Helix 41	AE5	C	117	130	Right-handed alpha
Helix 42	AE6	C	142	150	Right-handed alpha
Helix 43	AE7	C	177	180	Right-handed 310
Helix 44	AE8	C	186	198	Right-handed alpha
Helix 45	AE9	C	226	236	Right-handed alpha
Helix 46	AF1	C	237	246	Right-handed alpha
Helix 47	AF2	C	257	262	Right-handed alpha
Helix 48	AF3	C	281	286	Right-handed alpha
Helix 49	AF4	C	286	291	Right-handed alpha
Helix 50	AF5	C	384	396	Right-handed alpha
Helix 51	AF6	C	397	407	Right-handed alpha
Helix 52	AF7	C	412	417	Right-handed 310
Helix 53	AF8	C	419	432	Right-handed alpha
Helix 54	AF9	C	444	449	Right-handed 310
Helix 55	AG1	C	450	460	Right-handed alpha
Helix 56	AG2	C	461	462	Right-handed 310
Helix 57	AG3	C	463	469	Right-handed 310
Helix 58	AG4	C	472	479	Right-handed alpha
Helix 59	AG5	D	55	61	Right-handed alpha
Helix 60	AG6	D	78	91	Right-handed alpha
Helix 61	AG7	D	97	101	Right-handed 310
Helix 62	AG8	D	112	126	Right-handed alpha
Helix 63	AG9	D	137	145	Right-handed alpha
Helix 64	AH1	D	181	195	Right-handed alpha
Helix 65	AH2	D	205	217	Right-handed alpha
Helix 66	AH3	D	222	232	Right-handed alpha
Helix 67	AH4	D	252	257	Right-handed alpha
Helix 68	AH5	D	258	262	Right-handed 310
Helix 69	AH6	D	263	268	Right-handed 310
Helix 70	AH7	D	273	283	Right-handed alpha
Helix 71	AH8	D	286	295	Right-handed alpha
Helix 72	AH9	D	301	305	Right-handed 310
Helix 73	AI1	D	308	321	Right-handed alpha
Helix 74	AI2	D	334	336	Right-handed 310
Helix 75	AI3	D	337	349	Right-handed alpha
Helix 76	AI4	D	351	356	Right-handed 310
Helix 77	AI5	D	358	366	Right-handed alpha
Helix 78	AI6	D	369	374	Right-handed alpha
Helix 79	AI7	H	352	390	Right-handed alpha
Helix 80	AI8	E	352	390	Right-handed alpha

There are 25 sheets in PDB entry 5I9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	25	30	anti-parallel
Strand 3	A	17	21	anti-parallel
Strand 4	A	107	112	parallel
Strand 5	A	136	141	parallel
Strand 6	A	470	471	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	43	47	anti-parallel
Strand 3	A	69	73	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	79	80	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	181	183	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	155	160	anti-parallel
Strand 4	A	408	411	parallel
Strand 5	A	439	440	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	277	278	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	132	136	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	36	anti-parallel
Strand 3	B	67	68	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	25	30	anti-parallel
Strand 3	C	17	21	anti-parallel
Strand 4	C	107	112	parallel
Strand 5	C	136	141	parallel
Strand 6	C	470	471	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	43	47	anti-parallel
Strand 3	C	69	73	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	79	80	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	165	171	anti-parallel
Strand 3	C	181	183	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	165	171	anti-parallel
Strand 3	C	155	160	anti-parallel
Strand 4	C	408	411	parallel
Strand 5	C	439	440	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	217	218	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	277	278	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	132	136	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	37	anti-parallel
Strand 3	D	66	68	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5I9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
5I9E