Analysis of interatomic Contacts of Structural Units in PDB entry:
5IBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IBQ entry

There is 1 chain in PDB entry 5IBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 26THR 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5IBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 56Right-handed alpha
Helix 2
AA2
A
68 82Right-handed alpha
Helix 3
AA3
A
97 107Right-handed alpha
Helix 4
AA4
A
131 147Right-handed alpha
Helix 5
AA5
A
162 177Right-handed alpha
Helix 6
AA6
A
193 208Right-handed alpha
Helix 7
AA7
A
218 232Right-handed alpha
Helix 8
AA8
A
245 254Right-handed alpha
Helix 9
AA9
A
264 283Right-handed alpha
Helix 10
AB1
A
302 304Right-handed 310
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There are 4 sheets in PDB entry 5IBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
29 34parallel
Strand 3
A
86 89parallel
Strand 4
A
111 114parallel
Strand 5
A
126 130parallel
Strand 6
A
290 293parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 189first strand
Strand 2
A
151 157parallel
Strand 3
A
213 216parallel
Strand 4
A
238 240parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
296 298anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
310 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il