Analysis of interatomic Contacts of Structural Units in PDB entry:
5IBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IBV entry

There is 1 chain in PDB entry 5IBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 77LEU 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5IBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 131Right-handed alpha
Helix 2
AA2
A
171 179Right-handed alpha
Helix 3
AA3
A
195 200Right-handed alpha
Helix 4
AA4
A
214 218Right-handed 310
Helix 5
AA5
A
295 305Right-handed alpha
Helix 6
AA6
A
342 349Right-handed alpha
Helix 7
AA7
A
372 378Right-handed alpha
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There are 6 sheets in PDB entry 5IBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 93first strand
Strand 2
A
243 258anti-parallel
Strand 3
A
132 146anti-parallel
Strand 4
A
190 194anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 93first strand
Strand 2
A
243 258anti-parallel
Strand 3
A
132 146anti-parallel
Strand 4
A
201 208anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
222 228anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
181 185anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
232 233anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 275first strand
Strand 2
A
400 406anti-parallel
Strand 3
A
318 328anti-parallel
Strand 4
A
350 356anti-parallel
Strand 5
A
365 370anti-parallel
Strand 6
A
288 291anti-parallel
Strand 7
A
278 280anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 275first strand
Strand 2
A
400 406anti-parallel
Strand 3
A
318 328anti-parallel
Strand 4
A
309 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il