Analysis of interatomic Contacts of Structural Units in PDB entry:
5IBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IBY entry

There is 1 chain in PDB entry 5IBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -3TYR 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5IBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
54 61Right-handed alpha
Helix 4
AA4
A
97 102Right-handed alpha
Helix 5
AA5
A
102 112Right-handed alpha
Helix 6
AA6
A
155 157Right-handed 310
Helix 7
AA7
A
158 163Right-handed alpha
Helix 8
AA8
A
185 189Right-handed 310
Helix 9
AA9
A
190 194Right-handed 310
Helix 10
AB1
A
197 211Right-handed alpha
Helix 11
AB2
A
214 218Right-handed 310
Helix 12
AB3
A
224 238Right-handed alpha
Helix 13
AB4
A
241 246Right-handed alpha
Helix 14
AB5
A
291 299Right-handed alpha
Helix 15
AB6
A
304 313Right-handed alpha
Helix 16
AB7
A
316 321Right-handed alpha
Helix 17
AB8
A
325 334Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5IBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
31 35parallel
Strand 3
A
83 89anti-parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
130 140anti-parallel
Strand 6
A
124 127anti-parallel
Strand 7
A
118 120anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
40 43parallel
Strand 3
A
75 77anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 260first strand
Strand 2
A
263 272anti-parallel
Strand 3
A
275 283anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il