Analysis of interatomic Contacts of Structural Units in PDB entry:
5ICA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ICA entry

There are 4 chains in PDB entry 5ICA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 769LEU 931
B
 THR 744ARG 889
C
 LYS 900SER 1046
D
 ASP 729GLN 847
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5ICA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
770 804Right-handed alpha
Helix 2
AA2
A
815 821Right-handed alpha
Helix 3
AA3
A
825 837Right-handed alpha
Helix 4
AA4
A
841 849Right-handed alpha
Helix 5
AA5
A
850 852Right-handed 310
Helix 6
AA6
A
853 867Right-handed alpha
Helix 7
AA7
A
870 892Right-handed alpha
Helix 8
AA8
A
892 931Right-handed alpha
Helix 9
AA9
B
745 764Right-handed alpha
Helix 10
AB1
B
769 779Right-handed alpha
Helix 11
AB2
B
791 800Right-handed alpha
Helix 12
AB3
B
802 817Right-handed alpha
Helix 13
AB4
B
822 837Right-handed alpha
Helix 14
AB5
B
838 844Right-handed alpha
Helix 15
AB6
B
856 889Right-handed alpha
Helix 16
AB7
C
901 909Right-handed alpha
Helix 17
AB8
C
924 934Right-handed alpha
Helix 18
AB9
C
937 947Right-handed alpha
Helix 19
AC1
C
949 955Right-handed alpha
Helix 20
AC2
C
969 983Right-handed alpha
Helix 21
AC3
C
987 1002Right-handed alpha
Helix 22
AC4
C
1010 1045Right-handed alpha
Helix 23
AC5
D
730 740Right-handed alpha
Helix 24
AC6
D
742 753Right-handed alpha
Helix 25
AC7
D
757 765Right-handed alpha
Helix 26
AC8
D
768 782Right-handed alpha
Helix 27
AC9
D
786 801Right-handed alpha
Helix 28
AD1
D
801 809Right-handed alpha
Helix 29
AD2
D
811 847Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5ICA
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il