Analysis of interatomic Contacts of Structural Units in PDB entry:
5ICC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ICC entry

There is 1 chain in PDB entry 5ICC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1TYR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5ICC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
20 35Right-handed alpha
Helix 3
AA3
A
35 44Right-handed alpha
Helix 4
AA4
A
48 55Right-handed alpha
Helix 5
AA5
A
62 76Right-handed alpha
Helix 6
AA6
A
94 100Right-handed 310
Helix 7
AA7
A
107 115Right-handed alpha
Helix 8
AA8
A
116 121Right-handed alpha
Helix 9
AA9
A
122 124Right-handed 310
Helix 10
AB1
A
125 131Right-handed alpha
Helix 11
AB2
A
138 145Right-handed alpha
Helix 12
AB3
A
147 155Right-handed alpha
Helix 13
AB4
A
155 181Right-handed alpha
Helix 14
AB5
A
182 186Right-handed 310
Helix 15
AB6
A
199 209Right-handed alpha
Helix 16
AB7
A
219 224Right-handed alpha
Helix 17
AB8
A
254 258Right-handed 310
Helix 18
AB9
A
259 272Right-handed alpha
Helix 19
AC1
A
296 311Right-handed alpha
Helix 20
AC2
A
318 328Right-handed alpha
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There are 3 sheets in PDB entry 5ICC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
87 92anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
213 218parallel
Strand 3
A
190 194parallel
Strand 4
A
248 252parallel
Strand 5
A
280 285parallel
Strand 6
A
343 348anti-parallel
Strand 7
A
332 336anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
316 317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il