Analysis of interatomic Contacts of Structural Units in PDB entry:
5ICH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ICH entry

There are 2 chains in PDB entry 5ICH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -2TYR 334
B
 PHE -2TYR 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5ICH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
54 62Right-handed alpha
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
155 163Right-handed alpha
Helix 6
AA6
A
185 189Right-handed 310
Helix 7
AA7
A
190 194Right-handed 310
Helix 8
AA8
A
197 211Right-handed alpha
Helix 9
AA9
A
214 218Right-handed 310
Helix 10
AB1
A
224 238Right-handed alpha
Helix 11
AB2
A
241 246Right-handed alpha
Helix 12
AB3
A
291 299Right-handed alpha
Helix 13
AB4
A
304 314Right-handed alpha
Helix 14
AB5
A
316 321Right-handed alpha
Helix 15
AB6
A
325 334Right-handed alpha
Helix 16
AB7
B
10 25Right-handed alpha
Helix 17
AB8
B
48 53Right-handed alpha
Helix 18
AB9
B
54 62Right-handed alpha
Helix 19
AC1
B
98 112Right-handed alpha
Helix 20
AC2
B
155 162Right-handed alpha
Helix 21
AC3
B
185 189Right-handed 310
Helix 22
AC4
B
190 194Right-handed 310
Helix 23
AC5
B
197 211Right-handed alpha
Helix 24
AC6
B
214 218Right-handed 310
Helix 25
AC7
B
224 238Right-handed alpha
Helix 26
AC8
B
241 246Right-handed alpha
Helix 27
AC9
B
291 299Right-handed alpha
Helix 28
AD1
B
304 314Right-handed alpha
Helix 29
AD2
B
316 322Right-handed alpha
Helix 30
AD3
B
325 334Right-handed alpha
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There are 6 sheets in PDB entry 5ICH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
31 35parallel
Strand 3
A
81 89anti-parallel
Strand 4
A
143 151anti-parallel
Strand 5
A
130 140anti-parallel
Strand 6
A
124 127anti-parallel
Strand 7
A
118 120anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
40 43parallel
Strand 3
A
75 77anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 260first strand
Strand 2
A
263 272anti-parallel
Strand 3
A
275 283anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
31 35parallel
Strand 3
B
81 89anti-parallel
Strand 4
B
143 151anti-parallel
Strand 5
B
130 140anti-parallel
Strand 6
B
124 127anti-parallel
Strand 7
B
117 120anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
40 43parallel
Strand 3
B
75 77anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 260first strand
Strand 2
B
263 272anti-parallel
Strand 3
B
275 283anti-parallel
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